Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5627 ATGGATTCACCATTTCCCGCCATTTCTCTCATCATCTTCCTCCTCTTCTTTTCCTCGAAACCTTCCCTGTCAACCACCGTCGGCGGCGTCGACACCATCTCCCGCCTTCTTCAAATCCAGCACCGCGAGAGTTCTCCACCGTCCGTCCAGGAAGCCGCCGCTCGCGGTGTCCTCCTCCGCTTGCTCCCTTCACACTCCTCCAGCTTCCACTTCCGGATAGTCTCCAAGAATAAATGCGGTGGCGAATATTGTTTCTCGATTAAAAACCATCCTTCTTTTGCAAGACAAGGGAATCCTCAAATTTTAATTGAAGGGACAACTGGAGTGGAGATTGTTGCTGGTTTGCACTGGTATCTAAAGAATTGGTGTGGTTCACATATATCTTGGGATAAAACCGGGGGTTCACAACTATATTCAGTACCGAATGCAGGGTTTCTACCACGCGTTCGCGATGGTGGTGTCTTGGTTCAGAGGCCTATTCCGTGGAGCTATTACCAAAATGCAGTTACTTCTAGCTATTCCTTTGCTTGGTGGGACTGGACAAGATGGGAAAAGGAAATTGACTGGATGGCCCTGCAGGGTGTCAACTTGCCACTAGCATTTACGGGACAAGAAGCTATCTGGCAGAAAGTGTTCAAGGAGAAATTTAACATGACCATTTCTGATATGGATGATTTCTTCGGAGGTCCTGCATTTCTTGCATGGTCACGTATGGGAAATTTACACAGATGGGGTGGACCACTGCCACAGAGCTGGTTAGATCAACAATTAATCTTGCAGAAGAAAATTATTAGCAGAATGTATGAGCTTGGAATGACACCTGTCCTGCCAGCTTTTTCTGGAAATGTCCCTGCTTCTCTGAAATATATATTCCCATCAGCAAAAATAACACGCTTGGGAAATTGGTTTTCTGTTGAAAATGAGCTCAAATGGAGCTGCACCTATCTTCTTGATGCAACTGATCCCTTGTTCAGTGAGATCGGGAAAGCATTTGTTGAGCAACAATTGCAAGAGTACGGAAGAACCAGCCACATATACAACTGTGATACCTTTGATGAGAACACTCCACCGAGTGATGATCCACAGTACATTTCTTCATTGGGCGCAGCAATCTTTAAAGGGATGCAGAGAGGTGATAATGATGCTGTTTGGCTGATGCAGGGATGGCTATTTTCATATGACCCGTTCTGGGAACCTCCTCAAATAAAGGCCCTTTTACATTCTGTTCCTGTTGGAAAGTTGGTGGTTCTTGACCTGTTTGCTGAAGTAAAACCCATATGGATTACGTCAGAGCAGTTTTATGGAGTTCCCTACATCTGGAAAGTCATTTTTCATTTTATACTTATAAATAGAAATAATATTGTCTGTATTACGCTTGACAGGTGTATGCTGCACAATTTTGCAGGAAACATTGAGATGTATGGGATATTAGATGCGATAGCATCTGGGCCAGTTGAAGCACGTTCAAGTGTTAACTCAACAATGGTTGGAGTTGGAATGTCAATGGAAGGTATAGAACAGAATCCTGTTGTCTATGATCTGATGTCTGAAATGGCATTTCAACACAATAAAATCGATGTTCAGGTGTGGGTTGATCTATATTCAACTAGAAGATATGGAAGACCTGTTCCTTTAATACAAGAGGGATGGAATATCCTATATCACACCATTTACAATTGCACTGATGGAGCCTATGACAAAAACAGAGATGTCATTGTAGCATTGCCAGATGTTGACCCATCCATAATTTCAGCACAACATGAATGGTCTCACAAATCTGGCAAGCCATACTCAGGATCAATTATCAAGGAAATATCTGATTCCTTTGATCGACCACATTTATGGTATTCGACTTCTGAAGTAATTCATGCATTGGAGCTATTTATACTTAATGGAAATGAACTTTCAAGAAGCAATACTTATAGGTACGATCTTGTTGATCTGACTAGACAAGTCTTAGCAAAGTATGCAAATCAGTTGTTCTTTATGGTCATAGAGGCATACCAATCACATGATGTCCACGGAGTGACTCTGCTCAGCCAGAGATTTCTGGACCTAGTAGAGGATTTGGACACACTATTGGCTTGCCATGATGGATTTCTACTGGGACCCTGGTTAGAAAGTGCAAAAGAATTAGCTCAAAATGAAGATCAGAAGAGACAGTTTGAGTGGAATGCTAGAACACAAATAACCATGTGGTTTGACAACACAGAGGAGGAACCCAGCTTGCTCCGTGACTATGGAAACAAGTACTGGAGCGGGGTTCTTCATGATTACTATGGCCCAAGAGCTGCTATTTATTTCAAATATTTAAGAGAAAGCTTAGACAGAGGTGAGGATTTCAAGCTAAAGGAATGGAGGAGGGAGTGGATAAAGCTTACTAATGATTGGCAAAGCAGTAGGAATATATTTCCTGTGGAAAGTAGAGGTGATGCTCTAAACACTTCTAGGTGGCTATTCAACAAATACCTGAACTTGAGCTACCCTGAGACCAAGATTGCACTGGAATAG 2511 0.4257 MDSPFPAISLIIFLLFFSSKPSLSTTVGGVDTISRLLQIQHRESSPPSVQEAAARGVLLRLLPSHSSSFHFRIVSKNKCGGEYCFSIKNHPSFARQGNPQILIEGTTGVEIVAGLHWYLKNWCGSHISWDKTGGSQLYSVPNAGFLPRVRDGGVLVQRPIPWSYYQNAVTSSYSFAWWDWTRWEKEIDWMALQGVNLPLAFTGQEAIWQKVFKEKFNMTISDMDDFFGGPAFLAWSRMGNLHRWGGPLPQSWLDQQLILQKKIISRMYELGMTPVLPAFSGNVPASLKYIFPSAKITRLGNWFSVENELKWSCTYLLDATDPLFSEIGKAFVEQQLQEYGRTSHIYNCDTFDENTPPSDDPQYISSLGAAIFKGMQRGDNDAVWLMQGWLFSYDPFWEPPQIKALLHSVPVGKLVVLDLFAEVKPIWITSEQFYGVPYIWKVIFHFILINRNNIVCITLDRCMLHNFAGNIEMYGILDAIASGPVEARSSVNSTMVGVGMSMEGIEQNPVVYDLMSEMAFQHNKIDVQVWVDLYSTRRYGRPVPLIQEGWNILYHTIYNCTDGAYDKNRDVIVALPDVDPSIISAQHEWSHKSGKPYSGSIIKEISDSFDRPHLWYSTSEVIHALELFILNGNELSRSNTYRYDLVDLTRQVLAKYANQLFFMVIEAYQSHDVHGVTLLSQRFLDLVEDLDTLLACHDGFLLGPWLESAKELAQNEDQKRQFEWNARTQITMWFDNTEEEPSLLRDYGNKYWSGVLHDYYGPRAAIYFKYLRESLDRGEDFKLKEWRREWIKLTNDWQSSRNIFPVESRGDALNTSRWLFNKYLNLSYPETKIALE* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5627 836 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 164 446 IPR024733 -
Lja1g5627 836 Pfam Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain 462 521 IPR024733 -
Lja1g5627 836 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 49 825 IPR007781 -
Lja1g5627 836 Gene3D - 25 151 IPR029018 -
Lja1g5627 836 Pfam Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain 52 147 IPR024240 -
Lja1g5627 836 Gene3D Glycosidases 159 522 - -
Lja1g5627 836 Pfam Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain 530 822 IPR024732 -
Lja1g5627 836 Gene3D - 524 832 - -
Lja1g5627 836 PANTHER ALPHA-N-ACETYLGLUCOSAMINIDASE 49 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5627 Lja-Chr1 98629785 98642295 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5627 K01205 - gmx:100791160 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5627 1 98629785 98642295 Lja1g5627 1 98629785 98642295 ECH