Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5623 ATGTTCAGTCAGTTTCTGGTGAAGCTACCTCAACAAACCTCCACCACTTCTCATCTCCACCTTCTCTCCCCACCCAAATTCCGATCTCGGCTTCCACATCAGTCGCTCACAACAGTTCCCCAACCGCCAGCGCCACCGTCGCCGGAAGACGCCGCCGTAGCAAAACTCGTCCTCGAATCAGACCCCGGAACCCTCGCCGAAGCCCTAGAAAATTCCCCATTCCGATGGACCCCAGAGCTCGTCGACGAGGTCCTGAAGCGCCTATGGAACCACGGCCCCAAAGCCCTCCAATTCTTCAAGCACCTCGACCGCCACCCCACCTACATCCACTCCCCGTCGGGCTTCGAACACGCCATCGACATCGCTGCCCGCATGCGCGACTACACCACCGCCTGGACCCTCGTCAGCCGCATGCGCTCCCTCCGTCGCGGCCCTACCCCGCGAGCATTCGCCATCCTCGCCGAGAGGTACGCCGCCGCCGGGAAACCCCACCGTGCCGTGAGGGTTTTCATTTCAATGCACGAGCACGGTTGCCGCCAGGATCTGAACTCGTTTAACACCATCCTTGACGTTCTCTGTAAGACGAAACGTGTGGAAATGGCTCATAGCTTGTTCAAAACGTTTAGGGGTAGGTTTAGGTGTGATAGTGTGAGTTATAATATCATTGCTAATGGTTGGTGCTTGATTAAGCGAACGCCGATGGCTTTGCAAGTGTTGAAGGAGATGGCGGAGAGGGGGATTTCGCCGACGATGGTTACTTATAACACGCTGCTGAAAGGGTATTTTCGGTGTCATCAGCTCAGGGAAGCTTGGGAGTTCTTTTTGGAAATGAAGAAGAGGAAGTGTGAGATTGATGTTGTTACTTACACTACCATGGTTCACGGGTTTGGTGTTGCGGGGGAGGTTAAGAAATCGAAGAGGGTTTTTGATGAGATGGTTAGAGCGGGTTTGGTTCCTTCGGTTGCTACTTACAATGCTTTGATTCAGGTTTTGTGCAAGAAGGACTGTGTTCAGAATGCGTTGTTGGTTTTCGAAGAGATGGTGGGGAAGGGGTGTGTGCCTAATTTGAATACCTACAATGTTGTTATCAGAGGTTTGTGTCATTCTGGTGACATGGAGAGGGCAGTGGAGTATATGGGGAGGATGGAGAAACATGGTATCAGGCCTAGTGTTCAGACTTACAATGTGGTGATTCGTTATTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGAGCATGTTTGAGAAGATGGGGGATGGTTCGTGTTCGTGCTTGCCCAATTTGGACACGTACAATGTTCTGATCAGTGCAATGTTTGTAAGGAAGAAATCAGAAGATTTGGTGGTGGCTGGGAAGTTGTTGATTGAGATGGTGGATAGAGGGTTCCTACCGAGGAAATTCACTTTTAATCGGGTGTTGAATGGGCTTGCTCTGACTGGCAATCAAGAGTTTGCAAAGGAGATATTAAGAATGCAGAGCAGGTGCGGCCATGCTCTTCGACATTTGAAATTGTGA 1515 0.5089 MFSQFLVKLPQQTSTTSHLHLLSPPKFRSRLPHQSLTTVPQPPAPPSPEDAAVAKLVLESDPGTLAEALENSPFRWTPELVDEVLKRLWNHGPKALQFFKHLDRHPTYIHSPSGFEHAIDIAARMRDYTTAWTLVSRMRSLRRGPTPRAFAILAERYAAAGKPHRAVRVFISMHEHGCRQDLNSFNTILDVLCKTKRVEMAHSLFKTFRGRFRCDSVSYNIIANGWCLIKRTPMALQVLKEMAERGISPTMVTYNTLLKGYFRCHQLREAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKKSKRVFDEMVRAGLVPSVATYNALIQVLCKKDCVQNALLVFEEMVGKGCVPNLNTYNVVIRGLCHSGDMERAVEYMGRMEKHGIRPSVQTYNVVIRYFCDAGEIEKGLSMFEKMGDGSCSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLIEMVDRGFLPRKFTFNRVLNGLALTGNQEFAKEILRMQSRCGHALRHLKL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5623 504 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 30 504 - -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 393 422 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 287 321 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 184 206 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 323 355 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 217 250 IPR002885 -
Lja1g5623 504 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lja1g5623 504 Gene3D Tetratricopeptide repeat domain 247 335 IPR011990 GO:0005515
Lja1g5623 504 Gene3D Tetratricopeptide repeat domain 336 448 IPR011990 GO:0005515
Lja1g5623 504 Pfam PPR repeat family 249 296 IPR002885 -
Lja1g5623 504 Pfam PPR repeat family 389 438 IPR002885 -
Lja1g5623 504 Pfam PPR repeat family 319 368 IPR002885 -
Lja1g5623 504 PANTHER OS02G0679200 PROTEIN 30 504 - -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Lja1g5623 504 Pfam PPR repeat 217 247 IPR002885 -
Lja1g5623 504 Pfam Pentatricopeptide repeat domain 155 192 IPR002885 -
Lja1g5623 504 Gene3D Tetratricopeptide repeat domain 87 244 IPR011990 GO:0005515
Lja1g5623 504 MobiDBLite consensus disorder prediction 30 49 - -
Lja1g5623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5623 Lja-Chr1 98542693 98544502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5623 141 498 Glycosyltransferase AT1G05670 26.446 3.37e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5623 - - gmx:100808784 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5623 1 98542693 98544502 Lja1g5623 1 98542693 98544502 ECH