Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5606 ATGGCTTCTCGCTCATTCTCGCATTTTGTTGAAGAAGAGATGGGCAGGTTCCCACACTTTGTGATCTACGTGCTGCTTGAATGGGTGCTGATATTCATTCTCTTCCTTGATGGGTTTCTTGCATTTGTGGCCAACGAATTCGCGAGGTTCTTTGAATTGCAAATCCCTTGTTGGCTATGCACAAGGTTGGATCATGTACTTGTTCACAGAAACCCTGATTTCTATTACAATGAGTCTGTCTGTGAGGCTCACAAGAAAGACATGTCATCTTTGGCATTTTGCCACAACCACAAGAAGCTCTCTGACATAAGGAAAATGTGTGAAAATTGCTTGCTTTCGTTCGCGACGGAGAAGGAATCGGATTGCGGAACCTACAAGTCCCTTGTGGGGATTTTGCATAAGGATCTTGATTGCTTTGTTGAGGATGGACAACCAATGCAGCTGAGTTTGAAGGATGATGATGGGGTGATGATGCAGGCTGATAGGAGCAGCACTCAGAGGTGTTCTTGCTGTGGAGAGCCATTGAAGGTCAAGTCTTCTTATGGAAAAGTGAAGCACTCAGGATCGTTTATTGCGCGGGCTCCGACTCCATCACCGCGAGCTTTTCCATCAAAAACTGAGGAAACTAATGCTCTCGATACGCCTCGCATCAGGTACTCAGAGCTCAAGTTCATGTCAGATGATTCAGAGCTTCAAGAGGATGAGGGTGGCTTCAATGTCAATATGAGGGAAGACACCAAACCTCTATTGGCAGAAGGGGATGATTTAAACGATGAGTCCAACAAACTGACCCCAACTTTCTCAAGGGGCAACAAGTTCTTTGGAATCCCACTCACAGATTCAGCAAACAACAGCCCCAGATGGTCTTTCAAGACAAACAGGAAATCACCCCTAGAGAAAACAGAATTTGCCTCTGACTCAAATGAGATAACTGTTCAAAATGACTTTGATGATGCGATTGTCAACAATTTGAAGAGGCAAGTTCGTTTGGACCGCAAATCGCTCATGGAATTGTACATGGAGCTGGATGAAGAGAGAAGTGCTTCAGCTGTTGCCGCTAACAACGCAATGGCCATGATCACGCGGTTGCAGGCGGAGAAAGCAGCGGTGCAGATGGAAGCTTTGCAGTACCAGAGAATGATGGAGGAGCAGGCAGAGTATGATGAAGAAGCCCTGCAAGCAAGTAATGACATGCTTATCAAAAGAGAGGAAGAGATCAAAGTTTTGGAAGCTGCATTGGATATTTATAGAAACAAATATGGGTCCTTAGCAGAAGAAGATGTTTTAAAGGAAGTTCACTCATCTCATAGTGGTACCGGCTCTCTAAATGAAGGAGATGATAATAACGGAGAGAAAGGCCTGAATTCTAATCAAGCAGTGTCAGAAAATGGAGGGGTAAGGTACATTGAGCAAGTCAAAGATTTTAAAGCGGAGAAAACATACATTCTTGGCCGCATGAAGAAGATAGAAAATAGAACACCCTTTGCAGAAAATGGAATTTATCCCTTACAATCTAGCTCTGACACCGAGAGTGTTAGTACTATAGACAATGAGACAGATAATGCTATTCAAGACATCATTCTGGGAGCTCCGTGGTTCAAATCTAGTGCTAGGTTATGTGCATACATTAGCTGCAGCGCTTTACGCGAAGTCGATACGTCGAAACTGTTGTCGGAAATTCTGCAACCTTCCGCCGCCACTGGAGGAAAAAAACTGTACGTACCACGGGTGGAGGATAAAAATAGTCACATGCGTATGCTCAACATATCGCGTATTGATGATCTTGTGGCAAACTCAATGGACATTTTAGAACCAGCTCCAGTTGATGCTGATGGGAATGCACGAGAAGATGTTATGCAGGCGGATGACCCAGTCGATTTATTGCTTTTGCCTGGGCTGGCATTTGACAGAACTGGAAGACGTTTAGGCCGGGGCGGAGGTTACTATGATACCTTCCTCGAGAGCTACCAACACCTTGCAAAGACACGGAATTGGAAGCAGCCCTTGCTCGTTGCACTGTCATATTCCCAACAAATACTGGATGAAGGAGTAATACCAATGACATCGTCCGATGTTCCGGTTGATGCTCTTGTAACTCCAGCTGGTGTGATTCCCATCAGCACAGAAGCCTTCGATAGGTGTCAATGA 2148 0.4497 MASRSFSHFVEEEMGRFPHFVIYVLLEWVLIFILFLDGFLAFVANEFARFFELQIPCWLCTRLDHVLVHRNPDFYYNESVCEAHKKDMSSLAFCHNHKKLSDIRKMCENCLLSFATEKESDCGTYKSLVGILHKDLDCFVEDGQPMQLSLKDDDGVMMQADRSSTQRCSCCGEPLKVKSSYGKVKHSGSFIARAPTPSPRAFPSKTEETNALDTPRIRYSELKFMSDDSELQEDEGGFNVNMREDTKPLLAEGDDLNDESNKLTPTFSRGNKFFGIPLTDSANNSPRWSFKTNRKSPLEKTEFASDSNEITVQNDFDDAIVNNLKRQVRLDRKSLMELYMELDEERSASAVAANNAMAMITRLQAEKAAVQMEALQYQRMMEEQAEYDEEALQASNDMLIKREEEIKVLEAALDIYRNKYGSLAEEDVLKEVHSSHSGTGSLNEGDDNNGEKGLNSNQAVSENGGVRYIEQVKDFKAEKTYILGRMKKIENRTPFAENGIYPLQSSSDTESVSTIDNETDNAIQDIILGAPWFKSSARLCAYISCSALREVDTSKLLSEILQPSAATGGKKLYVPRVEDKNSHMRMLNISRIDDLVANSMDILEPAPVDADGNAREDVMQADDPVDLLLLPGLAFDRTGRRLGRGGGYYDTFLESYQHLAKTRNWKQPLLVALSYSQQILDEGVIPMTSSDVPVDALVTPAGVIPISTEAFDRCQ* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5606 715 Gene3D - 506 703 IPR024185 -
Lja1g5606 715 Pfam Zein-binding 323 412 IPR007656 -
Lja1g5606 715 PANTHER MYOSIN-BINDING PROTEIN 2 1 517 IPR039306 GO:0017022
Lja1g5606 715 SUPERFAMILY NagB/RpiA/CoA transferase-like 519 706 IPR037171 -
Lja1g5606 715 Coils Coil 353 397 - -
Lja1g5606 715 Pfam 5-formyltetrahydrofolate cyclo-ligase family 521 700 IPR002698 -
Lja1g5606 715 TIGRFAM MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 518 700 IPR002698 -
Lja1g5606 715 ProSiteProfiles GTD-binding domain profile. 319 417 IPR007656 -
Lja1g5606 715 MobiDBLite consensus disorder prediction 434 459 - -
Lja1g5606 715 MobiDBLite consensus disorder prediction 431 459 - -
Lja1g5606 715 PANTHER MYOSIN-BINDING PROTEIN 6-RELATED 1 517 - -
Lja1g5606 715 Coils Coil 399 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5606 Lja-Chr1 98176823 98183194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5606 - - gmx:100817859 796.578