Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5584 ATGGCTGTTCAGAGCTCCATTTCCAGCGAAGCGCAAGCTTCAAAAAGCGATTCTCATGGCCATTTCTTTGTATGGAGAGAATTTGTTTGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATTATGCATCCGGTAGATACTGTTAAAACACGGATACAAAGTCAAGCTATTCTAAATAGAATTGAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGCAAGTTGATGGATTAAGAGGGTTTTACAGGGGTGTACTACCTGGTATTACGGGGTCTCTAGCAACTGGTGCAACATATTTTGGTGTCATAGAGTCCACTAAAAACTGGATTGAGGATTCACATCCGAGCCTTAGGGGCCACTGGGCACATTTCATTGCAGGAGCTGTTGGAGATACTCTCGGTTCTATTGTGTATGTTCCTTGCGAAGTGATAAAACAGCGTATGCAAGTTCAAGGAACAATTAAATCTTGGAGTTCCATTGCAAGGGAAAATGGCGCTGCAATAAAGCCTGGGTCACAAATATATAGTTATTATACAGGGATGTTCCATGCAGGCTGCTCAATATGGAAAACACATGGCCTCAAGGGCTTATATGCAGGATATTTGTCTACACTGGCGAGGGACATTCCATTTGCTGGCCTAATGGTCGTGTTCTATGAAGGTTTGAAAGATGTCACGGAGTATGGGAAGCAAAAATGGACATCCAGTCCAAATTGGCAAATTAGTAATTCGCTCGAGGGACTAGTTCTAGGAGGATTAGCCGGTGGCCTGAGTGCATATCTCACTACTCCTTTGGATGTCGTCAAAACAAGGCTGCAAGTGCAGGGATCAACTTTAAGGTATAGTGGCTGGTTGGATGCAATTCACAATGTATGGGCTAGGGAAGGGATGAAGGGGATGTTTAGGGGTAGCATCCCCAGGATTACATGGTACATTCCGGCTTCTGCGCTAACATTCATGGCTGTGGAATTTCTCAGAGATCATTATAATGAAAAAGTGCCCCGTTATGATTCACGAGATGCTACCAGATTATCAGTATCCAAGAAAAAATCTCTGCAGGAGGTTGCTTAA 1077 0.4438 MAVQSSISSEAQASKSDSHGHFFVWREFVWGAVAGAFGEGIMHPVDTVKTRIQSQAILNRIENQKGILQMVRSVWQVDGLRGFYRGVLPGITGSLATGATYFGVIESTKNWIEDSHPSLRGHWAHFIAGAVGDTLGSIVYVPCEVIKQRMQVQGTIKSWSSIARENGAAIKPGSQIYSYYTGMFHAGCSIWKTHGLKGLYAGYLSTLARDIPFAGLMVVFYEGLKDVTEYGKQKWTSSPNWQISNSLEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYSGWLDAIHNVWAREGMKGMFRGSIPRITWYIPASALTFMAVEFLRDHYNEKVPRYDSRDATRLSVSKKKSLQEVA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5584 358 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
Lja1g5584 358 Pfam Mitochondrial carrier protein 23 114 IPR018108 -
Lja1g5584 358 Pfam Mitochondrial carrier protein 247 334 IPR018108 -
Lja1g5584 358 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
Lja1g5584 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Lja1g5584 358 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 355 - -
Lja1g5584 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Lja1g5584 358 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 355 - -
Lja1g5584 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Lja1g5584 358 Gene3D Mitochondrial carrier domain 172 349 IPR023395 -
Lja1g5584 358 Gene3D Mitochondrial carrier domain 2 171 IPR023395 -
Lja1g5584 358 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Lja1g5584 358 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Lja1g5584 358 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Lja1g5584 358 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5584 Lja-Chr1 97676145 97682349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5584 24 328 EF-hand Containing Proteins AT2G35800 27.097 2.34e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5584 - - gmx:100790921 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5584 1 97676145 97682349 Lja1g5584 1 97676145 97682349 ECH