LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5573	ATGGGTTGTTTCGCCAGCAAAAACGCTGACACCAAAGCCAGTAGAACCGCGCGGTGGCGATCCACCGGCATTGTTGCTCTGCGCGATTCCAAATTGAAGACATTTCCAGATGAAATTCTTGATTTAGACAGATCAGTACGCACCCTTGACTTAACACATAATCGAATAGTTGACATTCCCCTGGAAATTAGCAAATTAGTTAATGTGCAGCGCCTGGTATTAGCAGACAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTAAAACTCGTGAACCTTGATGGAAATCGAATTACGTCCTTGCCAGATGAATTGGGCCAGTTAGTAAGGCTTGAACGCTTATCGATCTCAGGGAATTTGTTGACATCCTTGCCAGAAACTATTGGCAGTTTGAGAAATTTGTTGATTTTAAACGTGTCAAATAACAAGTTAAAGTCTCTTCCAGAATCCGTTGGGAGTTGCTTCTCTTTGGAAGAACTACAAGCTGATGATAATCTTATTGAAGATCTTCCCTCTTCTGTGTGCAATCTCTCCCACTTGAAGTCACTTTCCTTAGATAACAATAAAGTGAAGCAGATTCCTCCGAATCTATTGAAGGACTGCAAAACTCTTCAGAACATATCACTGCATGGAAATCCTATATCAATGGATCAATTTCAACAGATGGATGGGTTTCAAGAGTTTGAAGGGAGGAGGAGAAAGAAGTTTGACAAACAGATTGATTCAAATGTGATGATCAGTTCCAAAGGTCTTGATGAGGGCGTCGATCTATGA	786	0.4148	MGCFASKNADTKASRTARWRSTGIVALRDSKLKTFPDEILDLDRSVRTLDLTHNRIVDIPLEISKLVNVQRLVLADNLIERLPVNLGKLQSLKLVNLDGNRITSLPDELGQLVRLERLSISGNLLTSLPETIGSLRNLLILNVSNNKLKSLPESVGSCFSLEELQADDNLIEDLPSSVCNLSHLKSLSLDNNKVKQIPPNLLKDCKTLQNISLHGNPISMDQFQQMDGFQEFEGRRRKKFDKQIDSNVMISSKGLDEGVDL*	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5573	261	PANTHER	LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED	2	253	-	-
	Lja1g5573	261	Pfam	Leucine rich repeat	91	148	IPR001611	GO:0005515
	Lja1g5573	261	Pfam	Leucine rich repeat	160	218	IPR001611	GO:0005515
	Lja1g5573	261	ProSiteProfiles	Leucine-rich repeat profile.	45	67	IPR001611	GO:0005515
	Lja1g5573	261	SMART	LRR_typ_2	66	88	IPR003591	-
	Lja1g5573	261	SMART	LRR_typ_2	112	134	IPR003591	-
	Lja1g5573	261	SMART	LRR_typ_2	181	204	IPR003591	-
	Lja1g5573	261	SMART	LRR_typ_2	135	158	IPR003591	-
	Lja1g5573	261	SMART	LRR_typ_2	89	111	IPR003591	-
	Lja1g5573	261	ProSiteProfiles	Leucine-rich repeat profile.	137	158	IPR001611	GO:0005515
	Lja1g5573	261	ProSiteProfiles	Leucine-rich repeat profile.	91	112	IPR001611	GO:0005515
	Lja1g5573	261	SMART	LRR_bac_2	160	177	-	-
	Lja1g5573	261	SMART	LRR_bac_2	112	131	-	-
	Lja1g5573	261	SMART	LRR_bac_2	89	108	-	-
	Lja1g5573	261	SMART	LRR_bac_2	135	154	-	-
	Lja1g5573	261	SMART	LRR_bac_2	181	200	-	-
	Lja1g5573	261	Gene3D	Ribonuclease Inhibitor	5	232	IPR032675	-
	Lja1g5573	261	SUPERFAMILY	L domain-like	24	221	-	-
	Lja1g5573	261	PANTHER	LEUCINE-RICH REPEAT-CONTAINING	2	253	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g5573	48	237	Receptor kinase-like Gene Family	AT3G47570	28.205	6.88e-09	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5573	-		-	gmx:100807758	470.314

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5573	1	97112177	97121925	Lja1g5573	1	97112177	97121925	ECH