Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5566 ATGGGATTCCACCTCGCATTGATACTCGTTTTGGCTTCTCTTCGACTAACTTTAAGTGAAGATATCGAGCATGGTTCGCTGCTCGTAAATGGAGCTCAAGCAAAAGCTGAAACAGGGGATAACTTTATTTGTGCCACCATTGATTGGTGGCCTCACGATAAGTGTGACTACAACCATTGCCCCTGGGGATATTCATCTGTTGTAAATTTGGACTTGTCTCATCCTTTCCTTGCCAAAGCAATCCAAGCATTCAAGCCGTTGAGGATAAGACTTGGAGGTTCTTTGCAAGACCAGGTGCTGTATGATGTAGGAAGTTTGAAGTATCCTTGTCATCTATTTCAAAAGATGAAAGGTGGACTGTTTGGATTTTCAAAGGGATGTTTACACATGGAAAGGTGGGATGAGCTGAATCAATTTTTCAATGAAACAGGGGCCATTGTGACATTTGGCTTGAACGCGCTCCACGGGAGGCACCAGATTAGTCATAATGTTTGGGAAGGAACCTGGGACCCTACTAATACTTATGATTTTATAAAGTACACTATTTCAAAAGGATACAAGATTGATTCCTGGGAACTTGGCAATGAGTTGAGTGGTAAGGGCATTGGTGCAAGTGTTGCTGTCGCACAGTATGGTAAAGACGTGATAAAACTTAAACAAATTCTAGATGTTTTATATGAGAGCTCCAAGTTCAAACCTTCACTTGTAGCACCTGGGGGATTTTATGAAAAGGAGTGGTATGACAAACTTCTTCAGGTTTCGGGTTCAGGCATAATCAATGTTCTAAGTCATCATTTATATAATTTGGGCCCAGGTAGTGATGAGCATCTTGAAAGGAAGATTTTAGATCCTGAGCGCTTGAGCAAGGTTGAAAATATTTTCAGCAATCTTTCAGCAACCATTCAAAAACATGGTCCTTGGACTTCTGCATGGGTAGGAGAAGCTGGTGGGGCATACAACAGTGGTGGCCGCTTTGTTTCTAACACATTTCTGAACAGCTTTTGGTACTTAGATCAACTTGGAATTGCATCCAGCTACGGGACTAAAGTTTACTGCAGACAGACTTTAATTGGAGGAAACTATGGCCTTCTCAATACCACCACCCTCACTCCCAATCCTGACTACTACAGTGCACTTTTGTGGCATCGGCTGATGGGAAAGAAGGTTCTTGCAGTTTCAAATGATATTTCTTCACCCTTTTTACGCACTTATGCCCATTGTTCAAAAGACAGCGTGGGTGTAACGTTACTGTTGATCAACTTGAGCAACCAGACTAATTTCATACTCAATGTTCAAAACCCTGTGACAGCAAGTGCTGAAGGAAATGCAGTGACCAAAAGCACCCATAAAGGAAACTCATTCTTTGACCATCTTAAGAGGACATTTTCTTGGGTTGGAACAAAAGGATCAGAAGTAACATACAGGGAAGAGTATCACCTAACTTCACATGATGACATCATTAGAAGCCAAACCATGGTACTGAACGGTATTCCACTGGAGTTAACAAGTGAGGGAAATTTTCCACCATTGGATCCAGTACGCAGTAATGTACTATCTCCAATATACATGGCTCCTTTGTCCATTGCATTTATTGTTTATCCTAACTTTGATGCTCCAGCATGTGCTAGACACAGAAAACTTTAG 1644 0.4161 MGFHLALILVLASLRLTLSEDIEHGSLLVNGAQAKAETGDNFICATIDWWPHDKCDYNHCPWGYSSVVNLDLSHPFLAKAIQAFKPLRIRLGGSLQDQVLYDVGSLKYPCHLFQKMKGGLFGFSKGCLHMERWDELNQFFNETGAIVTFGLNALHGRHQISHNVWEGTWDPTNTYDFIKYTISKGYKIDSWELGNELSGKGIGASVAVAQYGKDVIKLKQILDVLYESSKFKPSLVAPGGFYEKEWYDKLLQVSGSGIINVLSHHLYNLGPGSDEHLERKILDPERLSKVENIFSNLSATIQKHGPWTSAWVGEAGGAYNSGGRFVSNTFLNSFWYLDQLGIASSYGTKVYCRQTLIGGNYGLLNTTTLTPNPDYYSALLWHRLMGKKVLAVSNDISSPFLRTYAHCSKDSVGVTLLLINLSNQTNFILNVQNPVTASAEGNAVTKSTHKGNSFFDHLKRTFSWVGTKGSEVTYREEYHLTSHDDIIRSQTMVLNGIPLELTSEGNFPPLDPVRSNVLSPIYMAPLSIAFIVYPNFDAPACARHRKL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5566 547 PANTHER GLYCOSIDE HYDROLASE FAMILY 79 AMINO-TERMINAL DOMAIN PROTEIN 1 546 - -
Lja1g5566 547 SUPERFAMILY (Trans)glycosidases 40 385 IPR017853 -
Lja1g5566 547 Gene3D Glycosidases 62 383 - -
Lja1g5566 547 PANTHER HEPARANASE-RELATED 1 546 - -
Lja1g5566 547 Pfam Glycosyl hydrolase family 79, N-terminal domain 26 341 IPR005199 GO:0016020|GO:0016798
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5566 Lja-Chr1 96990922 96996750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5566 1 542 Glycoside Hydrolase AT5G07830 59.016 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5566 K07964 - gmx:100807012 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5566 1 96990922 96996750 Lja1g5566 1 96990922 96996750 ECH