Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5538 ATGGCGCTTTTGGATCTGGAAAAGCACTTCGCCTTCTACGGCGCATACCACAGCAACCCAATCAACATCGCAATCCACATCCTCTTCGTTTGGCCAATCCTCTTCACCGCTCTCATCATCCTCTACTTCACACCACCTCTCTTCTCTCCCCTCATCCCCTATCATCCCTTTGTTTTCAACCTCGGCTTCTTCTTCGCAATCTTCTACGCTTTGTTCTACGCCGCTCTGGATCTCAAAGCCGGTTCCTTCACCGCGTTCCTCACCCTTCTCTGCTGGGTCGCTTCAAGTTTCGTCGCAAACTCCCTCGGCTTCTCACTCGCTTGGAAGGTTGTGTTGGCTGCCCAGATTTTTTGTTGGACTGGACAGTTTCTTGGTCATGGTTTGTTTGAGAAACGTGCACCGGCTCTGTTGGACAACCTTGCTCAAGCTTTTCTAATGGCTCCATTCTTTGTGGTTCTTGAGATCCTCCAATCATCCTTTGGATATGAACCATATCCCGGATTTCAGACTAGGGTGAAGGCGAGAATAGAAGCTGATATCAAACAGTGGCAAGAAACGAAACAAAAGAAACGTTCTTAG 579 0.4853 MALLDLEKHFAFYGAYHSNPINIAIHILFVWPILFTALIILYFTPPLFSPLIPYHPFVFNLGFFFAIFYALFYAALDLKAGSFTAFLTLLCWVASSFVANSLGFSLAWKVVLAAQIFCWTGQFLGHGLFEKRAPALLDNLAQAFLMAPFFVVLEILQSSFGYEPYPGFQTRVKARIEADIKQWQETKQKKRS* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5538 192 Coils Coil 173 192 - -
Lja1g5538 192 PANTHER DUF962 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_8G05310) 2 189 IPR009305 -
Lja1g5538 192 PANTHER YGL010W-LIKE PROTEIN 2 189 - -
Lja1g5538 192 Pfam 2-hydroxy-palmitic acid dioxygenase Mpo1-like 5 157 IPR009305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5538 Lja-Chr1 95837451 95840586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5538 - - vra:106756786 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5538 1 95837451 95840586 Lja1g5538 1 95837451 95840586 ECH