Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5528 ATGAAGTTTGATCTGGTGCTAGTTATTATAGCAACCATCATTTTTGGAATTGGGTTTGAAGGATGCGAGTGCAAGATTGTGCAGTTCATTTTTGGAGACTCTCTGTCGGACTCTGGAAATAACAAGTACCTCTCCAAAAGCCTTGCTCAGGCAAGTTTGCCTTGGTATGGTATTGATATGGGAAATGGGCTCCCTAATGGGAGGTTCTCTAATGGCCGCACGGTTGCTGATATAATAGGAGACAATATGGGGCTTCCTAGGCCTCCTGCATTCCTGGACCCATCTTTAAGTGAAGACATTATATTGGAAAATGGAGTGAATTATGCTTCTGGTGGAGGTGGCATATTGAATGAAACTGGCGGATATTTTATTCAAAGGTTTTCTCTCTACAAACAAATTGAGCTGTTTCAGGGGACACAAAAACTAATTACTAGCAAAATTGGAAAAGAGGAAGCAGAGAAGTTTTTCCAAGAAGCTCGTTATGTTGTTGCTTTAGGCAGTAACGATTTCATCAACAACTACTTGATGCCAGTTTACAGTGATTCTTGGACATACAATGATCAAACCTTCATGGACTACTTAGTAGGGACACTAGGAGATCAACTGAAGATACTGCATAGCCTTGGAGCAAGGCAATTGATGGTGTTTGGGCTGGGCCCAATGGGCTGCATTCCCCTGCAAAGGGTTCTTAGTACATCTGGGAATTGTCAAGAGAAAACAAACAACTTGGCTCTTAGCTTTAATAAAGCTACAAGCAAGTTAATATATGACTTGGGAAAAGAATTGCCCAATTCAAGCTACAGATTTGGAGATGCATATGATGTTGTTCAAAATGTGATTAGCAACCCAAGCAAGTATGGATTCGAAAACGCAGACTCACCCTGTTGCTCGTTCGGGAGAATTCGACCGGCTCTTACTTGCATCCCTGCATCGACGCTGTGCAAAGATAGAAGCAAGTACGTGTTTTGGGACGAGTACCATCCCTCAGACAGCGCAAATCAACTAATTGCGAATGAACTCATCAAGAAATTTGGATTTAAGCGTGTCGATGAAACCGGAGGTCCATCTCCATCACCTGACGTTGCTCCATCTCCGGATGATTCTTGA 1107 0.4264 MKFDLVLVIIATIIFGIGFEGCECKIVQFIFGDSLSDSGNNKYLSKSLAQASLPWYGIDMGNGLPNGRFSNGRTVADIIGDNMGLPRPPAFLDPSLSEDIILENGVNYASGGGGILNETGGYFIQRFSLYKQIELFQGTQKLITSKIGKEEAEKFFQEARYVVALGSNDFINNYLMPVYSDSWTYNDQTFMDYLVGTLGDQLKILHSLGARQLMVFGLGPMGCIPLQRVLSTSGNCQEKTNNLALSFNKATSKLIYDLGKELPNSSYRFGDAYDVVQNVISNPSKYGFENADSPCCSFGRIRPALTCIPASTLCKDRSKYVFWDEYHPSDSANQLIANELIKKFGFKRVDETGGPSPSPDVAPSPDDS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5528 368 MobiDBLite consensus disorder prediction 348 368 - -
Lja1g5528 368 SUPERFAMILY SGNH hydrolase 160 343 - -
Lja1g5528 368 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Lja1g5528 368 Gene3D SGNH hydrolase 28 345 IPR036514 -
Lja1g5528 368 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Lja1g5528 368 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 1 355 - -
Lja1g5528 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5528 Lja-Chr1 95463160 95469841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5528 29 340 Acyl Lipid Metabolism Gene Families AT4G10950 32.484 5.91e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5528 - - gmx:100803991 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5528 1 95463160 95469841 Lja1g5528 1 95463160 95469841 ECH