Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5508 ATGGCGTCCAGTATTGGCGTGATGGATGGTGCGTACTTTGTCGGCAGGAATGAGATTCTTAGTTGGATCAACAATCGCCTTCACCTTAACCTCTCTCGCATTGAGGAGGCTGCATCTGGTGCCGTACAATGCCAGATGATGGACATGACATTTCCAGGGGTTGTTCCAATGCACAAGGTGAATTTCGATGCAAAGTCAGAGTATGATATGATCCAAAATTACAAAGTTCTGCAGGAAGTGTTCAACAAACTGAAAATTGAGAAGCATATTGAAGTTAGCAGGCTTGTTAAAGGTCGGCCATTGGATAACTTAGAGTTCCTACAGTGGATGAAGCGTTACTGTGATTCTGTCAATGGTGGCATTATGAACGAGAACTATAATCCTGTGGAGCGTAGGTGTAAGGGTGGAAAGGACCGAAATAATAGGAGTTTAAAAAGTGCAAAGTCGCTGCCGGTAAATACTATGAATAATTCTGGTTCAGGCCATACACTCAGTCCAAATAAAACCTGTGGACCCAAACAATCAAGATCAAGTGGAGGAGCAGGTGCGGCTAGCTCATTGGCGGAGATTCAGGCTTTGTCCAAGCAGGTTACTGATCTCAAACTCTCAGTGGATCTCTTGGAAAAAGAACGAGACTTTTACTTTTCAAAACTAAGGGATATAGAAATTCTTTGTCAAACTACAGAACTGGAGAATGAACCTATGTCTGTAGCAGTTAAAAAGATTTTGTATGCCGCTGATGCATCTGAATCACCATTAGAGGAAGCTCAGGAGTACCTTAATCAAACTTTGCATGCTGTTGAAGAAGAACCAGAACCCGAACCAGAACCAGAAACTGAAACTGAAGCTTGA 852 0.4272 MASSIGVMDGAYFVGRNEILSWINNRLHLNLSRIEEAASGAVQCQMMDMTFPGVVPMHKVNFDAKSEYDMIQNYKVLQEVFNKLKIEKHIEVSRLVKGRPLDNLEFLQWMKRYCDSVNGGIMNENYNPVERRCKGGKDRNNRSLKSAKSLPVNTMNNSGSGHTLSPNKTCGPKQSRSSGGAGAASSLAEIQALSKQVTDLKLSVDLLEKERDFYFSKLRDIEILCQTTELENEPMSVAVKKILYAADASESPLEEAQEYLNQTLHAVEEEPEPEPEPETETEA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5508 283 Gene3D - 6 134 IPR036872 -
Lja1g5508 283 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Lja1g5508 283 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Lja1g5508 283 Coils Coil 190 210 - -
Lja1g5508 283 MobiDBLite consensus disorder prediction 131 183 - -
Lja1g5508 283 Pfam Calponin homology (CH) domain 16 113 IPR001715 GO:0005515
Lja1g5508 283 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1 272 IPR027328 GO:0008017
Lja1g5508 283 Gene3D - 182 279 - -
Lja1g5508 283 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
Lja1g5508 283 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Lja1g5508 283 SUPERFAMILY EB1 dimerisation domain-like 189 247 IPR036133 GO:0008017
Lja1g5508 283 MobiDBLite consensus disorder prediction 145 183 - -
Lja1g5508 283 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1B 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5508 Lja-Chr1 94783311 94788049 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5508 K10436 - gmx:100808026 426.402