Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5504 ATGAAACCCATTACTTCTTCGATTCTCTTCAATCTAAATTCATTGATTCTTTCCATTGACATGTTGGAGGGTCCATCGTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTGAGCAAGAGACAGAGTGGATTTACAATACTTGCCGTGTGATGGAGCTCACGAACAATAAGCGTCGACTGGAACTAGAGGAAGAAGCTGTGTTGAGAAAGTCATGCAAGCTTTCAGATGCTGCTGAGGAACAAGAAACAAGGAAGAATTTCCTTGAGCTTTCCCTTTCCCTCAACCAATCGAATGACCAAAACCGTGCAGGTGATCAATCAGACTCAAGTTCTCTTATCCACCAATTAGGCCGGGACATAACAATTAACTGTCTCCTACGATGCTCGAGATCTGATTACGGTTCGATTGCCTCGTTGAACCAGAGTTTTCGTTCTCTCATCCGGAGTGGAGAGCTTTATCGGCTGAGGCGGCAAATGGGTATCATAGAACACTGGGTTTACTTCTCTTGCAATCTTCCTGAATGGGAGGCATTTGATCCGAACAGCGGCAGGTGGATGCGCTTGCCGAGAATGCCTTCTAATGAATGTTTTATCTGTTCTGATAAGGAGTCACTGGCTGTTGGGACAGAGCTTCTTGTTTTTGGAAAGGAAATTATGTCTCCTGTCATTTACAGATATAGCATTCTGATGAACTCATGGTCATCTGGTATGGAAATGAACATCCCTAGATGCTTGTTCGGTTCCGCCAGCCTTGGAGAAGTCGCCATATTAGCCGGCGGTTGTGACCCACACGGCAACATCTTGAGCTCTGCTGAGCTTTATAACTCAGAAACTGGAACCTGGGAGATTCTTCCAAACATGAATAAAGCAAGAAAGATGTGTTCTGGTGTGTTTTTAGATGGGAAATTTTATGTCATAGGTGGGATTGGGATAGGTTGCTCAAAGCAGTTAACATCCGGTGAGGAGTTTGATCTGCAGACGAGAAAATGGCGTGAAATTCCCAACATGTTCCCGAGGAGAAATGGAGGATCTGGGGTGACTGAGTTACCACCTGCCGCAGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTACTTTATGCTGCAGATTATGCACTGCAAGAGGTGAGGAGATACTATATAGAAAATAACTCATGGGTTACTATTGGAAGATTACCGGAGCGGATAGTCTCGATGAATGGCTGGGGATTAGCCTTTCGAGCTTGTGGGAATCGCCTAATTGTTATTGGCGGTCCAAGAGCCTTGGATGGAAGGGTGATCGAAGTTAATGCTTGTGTCCCCGGCGAAGGTGAACCAGAGTGGAACCTGCTAGCCAGCCGGCAATCCGGGAGCTTCGTGTATAATTGTGCGGTGATGGGATGCTGA 1386 0.4589 MKPITSSILFNLNSLILSIDMLEGPSFLVSRDLPSSCEQETEWIYNTCRVMELTNNKRRLELEEEAVLRKSCKLSDAAEEQETRKNFLELSLSLNQSNDQNRAGDQSDSSSLIHQLGRDITINCLLRCSRSDYGSIASLNQSFRSLIRSGELYRLRRQMGIIEHWVYFSCNLPEWEAFDPNSGRWMRLPRMPSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSILMNSWSSGMEMNIPRCLFGSASLGEVAILAGGCDPHGNILSSAELYNSETGTWEILPNMNKARKMCSGVFLDGKFYVIGGIGIGCSKQLTSGEEFDLQTRKWREIPNMFPRRNGGSGVTELPPAAEAPPLVAVVNNVLYAADYALQEVRRYYIENNSWVTIGRLPERIVSMNGWGLAFRACGNRLIVIGGPRALDGRVIEVNACVPGEGEPEWNLLASRQSGSFVYNCAVMGC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5504 461 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 30 461 - -
Lja1g5504 461 Pfam Kelch motif 290 336 IPR006652 GO:0005515
Lja1g5504 461 Pfam Kelch motif 242 288 IPR006652 GO:0005515
Lja1g5504 461 SUPERFAMILY Kelch motif 170 458 IPR015915 GO:0005515
Lja1g5504 461 Coils Coil 50 70 - -
Lja1g5504 461 Gene3D - 155 443 IPR015915 GO:0005515
Lja1g5504 461 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 30 461 - -
Lja1g5504 461 SMART kelc_smart 302 349 IPR006652 GO:0005515
Lja1g5504 461 SMART kelc_smart 254 301 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5504 Lja-Chr1 94701606 94704660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5504 110 335 EF-hand Containing Proteins AT4G39560 27.391 9.37e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5504 - - gmx:100788507 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5504 1 94701606 94704660 Lja1g5504 1 94701606 94704660 ECH