Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5492 ATGTCAACTCCTGCTAGGAAGAGGCTGATGAGAGATTTCAAGAGGCTGCAGCAAGACCCGCCTGCAGGAATCAGTGGTGCCCCACAGGATAACAACATCATGTTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGTACGTTCAAGTTGACTCTCCAATTTAGTGAGGATTATCCAAATAAACCACCAACTGTACGATTTGTGTCTCGAATGTTTCATCCTAATATTTACGCAGATGGAAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACATCTATCCAGTCATTGCTTTGTGATCCCAACCCAAACTCTCCTGCAAACTCCGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAACCGCAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCAGACTAA 459 0.4379 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5492 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Lja1g5492 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Lja1g5492 152 SMART ubc_7 7 150 - -
Lja1g5492 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Lja1g5492 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
Lja1g5492 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Lja1g5492 152 CDD UBCc 7 145 IPR000608 -
Lja1g5492 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Lja1g5492 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5492 Lja-Chr1 94082384 94088966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5492 7 120 Miscellaneous Gene Families AT1G17280 31.092 4.22e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5492 K10573 - egr:104419230 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5492 1 94082384 94088966 Lja4g2166 4 23324425 23328254 ECH
Lja1g5492 1 94082384 94088966 Lja1g5492 1 94082384 94088966 ECH