Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5488 ATGGGGAATCTTTTCTGCTGTGTGCAAGTGGACCAATCCACAGTGGCTATCAAAGAAAGATTTGGACGATTTGAAGAAGTTCTTCAGCCAGGGTGCCACTGCTTGCCATGGATCCTTGGAAGTCAACTTGCCGGTCATCTCTCTATTCGTGTGCAGCAACTAGATGTTAAATGCGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCAGTGCAATATCGTGCCCTGTCTGAGAAGGCCAGTGATGCTTTCTACAAACTTAGCAATACAAAGACCCAAATCCAAGCCTATGTTTTTGATGTAATTAGAGCAAGTGTTCCAAAACTCCTCTTGGATGATGCTTTTGAACAGAAAAATGATATCGCCAAAGCTGTGGAAGAGGAGCTTGAGAAGGCCATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTGTTGATATTGAGCCAGATGAGAACGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGCTGGCAGCTACTGATAAGGCAGAGGCAGAGAAGATCTTGCAAATCAAGCGAGCTGAGGGTGAGGCTGAGTCTAAGTACCTCCATGGTGTCGGTATTGCTCGCCAGCGTCAAGCAATTGTGGATGGTTTGAGAGACAGCGTGCTCGGATTCTCCGGTAATGTACCAGGGACGACTGCAAAAGATGTCTTGGACATGGTCCTTGTCACTCAGTATTTCGACACTATGAAAGAAATTGGTGCTACCTCCAAGTCTTCTGCTGTTTTCATTCCCCATGGACCCGGTGCTGTTCGTGATGTAGCAAGCCAAATTCGTGATGGACTTCTTCAGGCTTCTCATCACTAG 855 0.455 MGNLFCCVQVDQSTVAIKERFGRFEEVLQPGCHCLPWILGSQLAGHLSIRVQQLDVKCETKTKDNVFVNVVASVQYRALSEKASDAFYKLSNTKTQIQAYVFDVIRASVPKLLLDDAFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDENVKRAMNEINAAARLRLAATDKAEAEKILQIKRAEGEAESKYLHGVGIARQRQAIVDGLRDSVLGFSGNVPGTTAKDVLDMVLVTQYFDTMKEIGATSKSSAVFIPHGPGAVRDVASQIRDGLLQASHH* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5488 284 Coils Coil 284 284 - -
Lja1g5488 284 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
Lja1g5488 284 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-LIKE 1 284 - -
Lja1g5488 284 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 284 - -
Lja1g5488 284 SMART PHB_4 5 165 IPR001107 -
Lja1g5488 284 Coils Coil 118 138 - -
Lja1g5488 284 Gene3D Band 7 domain 42 167 IPR036013 -
Lja1g5488 284 CDD SPFH_like_u4 10 278 - -
Lja1g5488 284 SUPERFAMILY Band 7/SPFH domain 46 171 IPR036013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5488 Lja-Chr1 93958543 93961107 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5488 - - tcc:18601448 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5488 1 93958543 93961107 Lja4g2176 4 23423714 23425931 ECH
Lja1g5488 1 93958543 93961107 Lja1g5488 1 93958543 93961107 ECH