Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5483 ATGGCAGAAAATCCATCCATTAACAACAACGCTCTCAAATTAGCAGACAAAGTAGCCATCATAACCGGTGGGGCCAGCGGCATCGGGGAAGCGACGGCGCGTGTCTTCGCCGACAACGGTGCGCGCGTGGTGGTGATCGCCGACATCCAGGACGAGCTGGGAAGCCAAGTGGCTGCATCAATCGGCACCCACCGCTGCACCTACGTCCACTGCGACGTGGAAGACGAGGAACAGGTCCGAAACCTCGTACAGTCAACGGTTAACGCCCACGGAACACTCGACATCATGTTCAGCAACGCCGGAATCCTCAGCCCCTCCGACCAGACCGTGACGGAGCTCGACATGTCCCAGCTGGACCACCTATTCGCAGTCAACGTCCGCGGCATGGCGGCGTGCGTCAAGCACGCGGCGCGTGCGATGATAGAGCGGTGCGTGAGGGGGAGCGTGGTCTGCACGGGGAGTGTCGCGGCCACCCACGCGGGGTCGAAGGGGACGGACTACACGATGTCGAAGCACGCGGTGTTGGGGCTGGTGCGTGCGGCGAGTGTGCAGCTTGGGGTGCACGGGATAAGGGTGAACTGCGTTTCACCGAATGGGTTGGCGACGCCGTTGACGTGTAACGCGCTAGGGGTGAGCGTGGAGAAGTTGCAGGAGGTTTATGCACGGTACGCGCGGCTGGAGGGAGTGGTGCTCACTCCGAAACACGTGGCGGAGGCGGTGTTGTTTCTGGTTTCCAGTGAGTCGGAGTTTGTCACCGGGCTTGATCTTCGTGTTGACGGTGGCTTTGCTTACGGCAAAGACCAGTGA 807 0.6109 MAENPSINNNALKLADKVAIITGGASGIGEATARVFADNGARVVVIADIQDELGSQVAASIGTHRCTYVHCDVEDEEQVRNLVQSTVNAHGTLDIMFSNAGILSPSDQTVTELDMSQLDHLFAVNVRGMAACVKHAARAMIERCVRGSVVCTGSVAATHAGSKGTDYTMSKHAVLGLVRAASVQLGVHGIRVNCVSPNGLATPLTCNALGVSVEKLQEVYARYARLEGVVLTPKHVAEAVLFLVSSESEFVTGLDLRVDGGFAYGKDQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5483 268 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 266 - -
Lja1g5483 268 PANTHER OXIDOREDUCTASE-RELATED 1 266 - -
Lja1g5483 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Lja1g5483 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 155 IPR002347 -
Lja1g5483 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 186 IPR002347 -
Lja1g5483 268 Gene3D - 6 265 - -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 167 186 IPR002347 -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 141 157 IPR002347 -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Lja1g5483 268 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Lja1g5483 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 262 IPR036291 -
Lja1g5483 268 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Lja1g5483 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 154 182 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5483 Lja-Chr1 93804741 93805744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5483 13 261 Acyl Lipid Metabolism Gene Families AT1G62610 27.237 4.43e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5483 - - gmx:100789873 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5483 1 93804741 93805744 Lja1g5483 1 93804741 93805744 ECH