Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5481 ATGGAGAATGTGACTAGTACCAGAACTAATTCTCCTTTTACAGTTGAAATAGAAGATGAGCAACCACCTCCTCCCTCTGTTGTTTCTACTTCTTCATCAAAAGAAGCTGGAGGATGGAGAGCCATCAAATATATCATTGCCAATGAATCGTTCGAGAAATTGGCGTCGATGAGTTTGATATCGAATATAACAGTGTACCTGCTTACAAATTACAACCTGGGTGGCATTTTTGTTGTTAATGTGGTGCAAATTTGGAGTGGATCCTCCAACATTGCATCAATAGCTGGAGCATTCATTTCTGATTCTTATCTGGGAAGGTTTCGGACCCTCCTCTATGGCTCTTTTGCATCTTTTCTGGGTATATTGACCATGACCCTAACAGCAGGTATTCATCAATTGAGACCCCCTACCTGCGAGCAGCCACCCAATTGCAAAGAGCCACAAGATTGGCAACTAGGAGTCCTCTTTGCAGCTCTGGGACTGTTATCCATAGGCGCTGGCGGCATCAGGCCCTGCAACATTGCTTTTGGCGCGGATCAATTCGACACTAATACTGAGAAAGGAAGAACAAACTTGGAGCGCTTCTTCAATTGGTGGTACTTCAGTTTCACCATTGCACTCGTTATTGCTCTCACTGGTGTTGTGTACATCCAAACAAATGTGAGCTGGACTTTAGGCTTTGCAATCCCAACAATTTGTCTTGCTGTCTCCATAACCATCTTCTTGCTTGGTCTCCACACTTACATTTGCAAAGAACCTCAAGGGAGCATCTTCCCAGACATGGCTAAAGTGATTGTAGCAGCGTGTCGAAAACGCAAACTGCAGAGTCAAGGAAAAGCCTTTTATGACCCTCATCTAGACTTGGAAAATAAAAGACTTGTTGCTCCCACAGATAGGTTCAAATTCTTTAACAAGGCTGCTATCATTGCTGCTCCAAGTGAATTAAACGACCAAGGGATTACGAAAAATGCATGGAGGCTTTGCAGTTTGCAGAATGTGGAAGACTTTAAATGCTTGCTGGGAATTCTTCCTGTTTGGGTAACTGGAATTTTCTGTTTCGTTGTCATGGACCAGCAGAACACTTTTGGAGTGCTTCAGGTTGCACAAACAAACAGGTCTTTAGGACCCCACTTCAAAGTCCCACCAGGGTGGATGAACCTGTCATCAATGATAGCACTTTCAATTTGGATCTACATTTATGAATGCATCTACATTCCTCTCACAAAGAGAATGTCTACAAGGGCTAAAAGATTGACCGTAGGGCAGAGAATAAAAATTGGGATTCTGCTATCTATTCTGTGCATGCTGGTAGCAGCAACTGTTGAGAAGAAGCGCCGTGACTCGGCTTTAAGACTCGGCTCGTTCGTCTCACCCACCAGCTTTGCATTGCTGCTGCCGCAGTTTGCGTTGTCCGGTCTAAATGAGGCATTTGCTGCTGTTGCTATAATGGAGTTCTTTACAATGCAGATGCCGGAGAGCATGAGGACCGTTGCTGGGGCTGTGTTTTTTCTGAGCATGTCCATTGCGAACTACATAGGTTCCTTGATTGTGACCATCATTCACAAAATAACATCACTCAAAGGAAGAACACCCTGGCTAGGTAGTCATGATTTGAACAAGAACAGGCTTGAGTACTACTATTATGTCATTGCTGTATTGGGGGGTTTGAATTTCCTGTACTTCAATTTCTTTGCTAGCAGTTATGTGATCAACAACAGCAAGGATACTGGGACAAGGGAAGTGCAGCAAGAGGGTTCAAAAGAAGGTAGGATGGGAGATAACACAGAGGATGAGGAGAATGCAATAGGCATAAATGGCACTAGATGA 1827 0.439 MENVTSTRTNSPFTVEIEDEQPPPPSVVSTSSSKEAGGWRAIKYIIANESFEKLASMSLISNITVYLLTNYNLGGIFVVNVVQIWSGSSNIASIAGAFISDSYLGRFRTLLYGSFASFLGILTMTLTAGIHQLRPPTCEQPPNCKEPQDWQLGVLFAALGLLSIGAGGIRPCNIAFGADQFDTNTEKGRTNLERFFNWWYFSFTIALVIALTGVVYIQTNVSWTLGFAIPTICLAVSITIFLLGLHTYICKEPQGSIFPDMAKVIVAACRKRKLQSQGKAFYDPHLDLENKRLVAPTDRFKFFNKAAIIAAPSELNDQGITKNAWRLCSLQNVEDFKCLLGILPVWVTGIFCFVVMDQQNTFGVLQVAQTNRSLGPHFKVPPGWMNLSSMIALSIWIYIYECIYIPLTKRMSTRAKRLTVGQRIKIGILLSILCMLVAATVEKKRRDSALRLGSFVSPTSFALLLPQFALSGLNEAFAAVAIMEFFTMQMPESMRTVAGAVFFLSMSIANYIGSLIVTIIHKITSLKGRTPWLGSHDLNKNRLEYYYYVIAVLGGLNFLYFNFFASSYVINNSKDTGTREVQQEGSKEGRMGDNTEDEENAIGINGTR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5481 608 Gene3D MFS general substrate transporter like domains 27 576 IPR036259 -
Lja1g5481 608 PANTHER PROTEIN NRT1/ PTR FAMILY 2.8 28 574 - -
Lja1g5481 608 CDD MFS_NPF1_2 42 568 - -
Lja1g5481 608 SUPERFAMILY MFS general substrate transporter 56 564 IPR036259 -
Lja1g5481 608 Pfam POT family 107 533 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g5481 608 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g5481 608 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g5481 608 MobiDBLite consensus disorder prediction 576 608 - -
Lja1g5481 608 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 28 574 IPR000109 GO:0016020|GO:0022857|GO:0055085
Lja1g5481 608 MobiDBLite consensus disorder prediction 580 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5481 Lja-Chr1 93791670 93794254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5481 15 574 Organic Solute Cotransporters AT5G28470 59.397 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5481 - - gmx:102670465 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5481 1 93791670 93794254 Lja1g5481 1 93791670 93794254 ECH