Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5464 ATGAAGGACCCATTTCATGAGTCACCAGATTTGCCTGATCTGTCAAGTTCACAAACAATTGTGGAACATAATTCAAAGAAGATGAAACATCAGAGGAAAATGCGGAAGACTCAGCATAATTCTGTCCAAAGCAATTTTGATGGTTGTGACAATCCAGATATATCTCAGGGAGAAAATGGCGTAAAGGAGCAGAATATGCTCCAAAAGACTGCAGAAAACAGCAATGGAGAGTGTGACGTCCAAGAAGTATGTTGCAACTGCAATTCAGTGGTGGCAGATGCCGTCTCTACCGCAGAAGAGTCTGTGATTGAATTTACAGAAAAGAACATTAAGCAAAATATAAATGATAACATTACCAACCCTGAGGAAAAGAGTACTTTTGTGAAGAATGCTAGTCTGGGGAAGAAACATGATGATGATAACGTAGGAGTTTGTCTATCTGTTAAAATTCCTCATGTCTATAATAGGGAAAAAATGTCACTGGACAGGACTGTTATCAGCTACCCAAAGAAAAAGCTTCTCATCCTTGATGTGAATGGATTGCTTGTTGATTTGGTCAGTGATGATTCTAAAGAAAATAATATAACACGAAAACCTGATTTTCGGGTTAGCAGGAGAAAAGGTTACTATAGGCCCTTTTGTAATGATTTTCTACGGTTTTGCTTTGACAGATTTCATGTGGGAGTTTGGTCATCTAGAAAAAGGACGAATCTTGATAGAGTCATCGAACTTGTTATGGGGAAATCTGCATATAAATTGCTCTTCCGTTGGAATCAGTACCACTGTACTCGAACAAAATTCAAAACTGTTGAGGATGTACAGAAGCCTATTTTTTTGAAGGAACTCCGCCTCTTGTGGGAAAAGAGGAATCCTAGGCTTCCGTGGAACAAGGGAGAGTTTAATGAATCAAACACATTATTATTGGATGACTCCCCTTACAAGGCACTTTTGAATCCTCATACAGCTGTATTTCCTTATACGTACCAGTACCATGACATTAAAGACTCATCATTAGGACCTGAAGGTGATCTACGGGTCTATCTAAAAGGGCTTGCGATGGCTGAGAATGTCCAAGAGTACGTGTCATCGAATCCATTTGGGCAACCTCCCATAACAGAAACTAATCCATCATGGGGTTACTATTGTCAAGTTTTAGAGTCAGTTAAGCACGAGCGCAGACTTCAAAATCAGGATTCAGGACCTCATCACCAGGTAGGGAGCAAATTGCTTTGCAAACAACGCAGGATGAAAGCTACTGCATTATATTGA 1269 0.398 MKDPFHESPDLPDLSSSQTIVEHNSKKMKHQRKMRKTQHNSVQSNFDGCDNPDISQGENGVKEQNMLQKTAENSNGECDVQEVCCNCNSVVADAVSTAEESVIEFTEKNIKQNINDNITNPEEKSTFVKNASLGKKHDDDNVGVCLSVKIPHVYNREKMSLDRTVISYPKKKLLILDVNGLLVDLVSDDSKENNITRKPDFRVSRRKGYYRPFCNDFLRFCFDRFHVGVWSSRKRTNLDRVIELVMGKSAYKLLFRWNQYHCTRTKFKTVEDVQKPIFLKELRLLWEKRNPRLPWNKGEFNESNTLLLDDSPYKALLNPHTAVFPYTYQYHDIKDSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQVLESVKHERRLQNQDSGPHHQVGSKLLCKQRRMKATALY* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5464 422 SUPERFAMILY HAD-like 167 358 IPR036412 -
Lja1g5464 422 SMART forpap2 170 333 IPR004274 -
Lja1g5464 422 MobiDBLite consensus disorder prediction 38 59 - -
Lja1g5464 422 ProSiteProfiles FCP1 homology domain profile. 167 351 IPR004274 -
Lja1g5464 422 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 23 392 - -
Lja1g5464 422 MobiDBLite consensus disorder prediction 1 59 - -
Lja1g5464 422 Gene3D - 147 365 IPR023214 -
Lja1g5464 422 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 23 392 - -
Lja1g5464 422 Pfam NLI interacting factor-like phosphatase 172 358 IPR004274 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5464 Lja-Chr1 93274051 93284273 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5464 - - lja:Lj4g3v2293410.1 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5464 1 93274051 93284273 Lja1g5464 1 93274051 93284273 ECH