Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5462 ATGGATAACAACAGTAACTCAGACCAAATTGTACTCGATGGCAAACTCTACAGACTCCTCAATTCTCTGATCGTCGCTCATCTTCGTGACAACAATCTCACTCAGGCTGCAACTGCTGTTGCTTCAGCAACCATGTCACCACTGAATGTAGAAGCACCTCCCAACAGGCTTCTTGAGCTCTTTGCTAAGGGTCTTGCAGTGGAAAAAGATGATGTGTCAAGAAAGACTTCATCTTCTCCCTTCCGCGATTTGGGTGCATCATTCCCAGTGCCTCGTCCTGGCGCAACAGCCATTGATTTCAGCTTTGTGCCAGATATAAAAGGTTCATCCAAGAGCTTCCCAAAGCATGAGACACGACATCTTTCAGAACACAAGAATATTGTCAGATGTGCTAAGTTTAGTCCTGATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTTCCTGAAGCAAAGGATGGTCCTGTGCGGTCCGTCATACGAACATATTATGACCATATACAACCAATAAATGATTTGGATTTTCATCCGCAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACCAATGCAAAGAGATCATCCAGGGTTATCCAGGACACACACAATGTTCGCTCTGTTTCTTTTCACCCCTCTGGGGATTTTCTGCTGGCTGGGACTGATCATGCAATTCCACATTTGTATGATATAAACACCTTTCAGTGTTATCTATCAGCAAATCTCCTGGATATTAGTCCTAATGGAGCCATAAACCAGGTCAGATATTCTTCTACAGGTGCCATGTATGTTACAGCTTGTAAAGATGGTGCTATTCGGTTATGGGATGGCATCACCGCCAATTGTGTGCGCACAATAATTGGAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAGAGATCAAAGGTTTGTCCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTCGCCTCTGGAAGATTAGTCAAACAGTATCTCGGAGCTACACATACACAGCTAAGATGCCAGGCAATGTTTAATGAGACAGAAGAATTTATTCTTTCTGTAGATGAATTCAGCAATGAGATCGTTATCTGGGATGCGATAACATCAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTCGGTGCACCCTGCTGGCTTGAACACTCACCAGTAGAGTCTGCTTTTATTTCATGTGGAACTGATAGGTCAGTTCGGTTTTGGAAGGAAAATCTATAG 1305 0.4276 MDNNSNSDQIVLDGKLYRLLNSLIVAHLRDNNLTQAATAVASATMSPLNVEAPPNRLLELFAKGLAVEKDDVSRKTSSSPFRDLGASFPVPRPGATAIDFSFVPDIKGSSKSFPKHETRHLSEHKNIVRCAKFSPDGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRSVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRSSRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANLLDISPNGAINQVRYSSTGAMYVTACKDGAIRLWDGITANCVRTIIGAHGTAEATSAIFTRDQRFVLSCGKDSTIKLWEVASGRLVKQYLGATHTQLRCQAMFNETEEFILSVDEFSNEIVIWDAITSEKVAKWPSNHVGAPCWLEHSPVESAFISCGTDRSVRFWKENL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Lja1g5462 434 SUPERFAMILY WD40 repeat-like 113 431 IPR036322 GO:0005515
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 162 IPR001680 GO:0005515
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 211 - -
Lja1g5462 434 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 7 433 IPR044633 GO:0005848|GO:0031124
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 155 - -
Lja1g5462 434 CDD WD40 117 431 - -
Lja1g5462 434 Pfam WD domain, G-beta repeat 225 248 IPR001680 GO:0005515
Lja1g5462 434 Pfam WD domain, G-beta repeat 173 209 IPR001680 GO:0005515
Lja1g5462 434 Pfam WD domain, G-beta repeat 118 152 IPR001680 GO:0005515
Lja1g5462 434 Pfam WD domain, G-beta repeat 304 342 IPR001680 GO:0005515
Lja1g5462 434 Pfam WD domain, G-beta repeat 273 299 IPR001680 GO:0005515
Lja1g5462 434 Gene3D - 107 434 IPR015943 GO:0005515
Lja1g5462 434 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Lja1g5462 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 308 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 215 253 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 170 209 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 114 153 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 262 299 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 391 431 IPR001680 GO:0005515
Lja1g5462 434 SMART WD40_4 302 343 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5462 124 390 Miscellaneous Gene Families AT5G08390 23.420 1.22e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5462 K14406 - gmx:100809908 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5462 1 93178299 93186179 Lja1g5462 1 93178299 93186179 ECH