Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5448 ATGCGGCGGCGGGCTGCCGAGTTTCGGCGCCCGGTTCGGCGGAGATTCTCTCATTGGATCTGCTTGCTTCTCTGCGCGTTCTCTGTTGCGGGTTTGGTGTTGTTCCTTGTGCAACACAATCACCATGAAGATCGTGTTCAACGTCCTGTTCTGGATAGGAATGCAAAAGTTGAACATTTTGCTAAGAAGAGTTTGAATTTTACTGAAGAAATTTTAGGTGCAAAATCCTTTTCGAGGCAATTAGCACAGCAAATGGTGCTCGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTAGCCTGGGAGCTTAGCTCCAAGATTAGGAGTTGCCAGCTTTTACTTTCAAAAGCTGCCATGACTGGGGAACCTGTCACCTTCGAGGAAGCGGAACCAATTATCAAAAGCCTATCTTCACTCATTTTCAAGGCACAAGATGTCCATTATGACATTGCAACCACTCTAGTGACGATGAAATCGCATATTCAAGCTCTTGAAGAGCGCGCCAATGCAGCGACAGTTCAAAGCACTGTATTTGCTCAAATATCAGCTGAAGCACTGCCAAAGAGTCTTCATTGCTTAAATGTGAAACTTACTGCTGATTGGCTAAAGACGCCATCGTTGCAAAAACTCTCAGACGAGCGGCGAAATTCCCCCGGGCTCATGGACCACAATCTATATCATTTCTGCATTTTTTCAGATAATGTACTAGCAACATCTGTAGTTGTTAACTCCACAGTCTTCAATGCTGACCATCCACAACAACTGGTCTTTCACATTGTCACTGATGCTATCAATTATGGAGCAATGCAAGCATGGTTCCTCAGCAGTGACTTTAAAGGAGCCACCATGGAGGTGCAGAACATTGAGGAGTTTGATTGGTTGAATGAGTCTTATTCTCCGATTGTCAAACAGCTACTCAATCCAGAATCGCGAGCCTTCTATTTCGGGGCATATCAAGATCTTAACATTGAACCAAAATTGCGGAACCCCAAGTTTTTGTCTTTACTAAATCATCTTCGATTTTACATCCCTGAGATCTATCCACAACTTGAGAAGATTGTTTTCCTTGATGATGATGTTGTTGTGCAGAAGGACCTGACTCCACTTTTTTCACTGGACTTGCATGGAAATGTAAATGGTGCAGTTGAAACTTGTCTTGAAGCGTTTCATCGTTTCTACAAGTATCTCAACTTCTCAAATTCAATCATAAGCTCAAAGATTGATCCACAGGCATGCGGATGGGCATTTGGTATGAATGTTTTCGACTTGGTTAAATGGAGGAAAGCAAATGTGACTGCAAGATATCACTATTGGCAGGAGCAGAATGCTGATGGTTCACTCTGGAAGCTTGGTACACTTCCTCCTGCTCTTTTAAGCTTTTATGGTTTGATAGAACCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTTAATATTGACAATCGCCTGATCGAAAGTGCGGCAGTTATTCACTTCAATGGGAACATGAAACCATGGCTGAAATTAGCTATAGGAAGGTATAAGCCACTATGGCACAAGTACATAAATCAAAGTCACCCTTATCTTCAAGATTGTGCCATAGAATAA 1608 0.426 MRRRAAEFRRPVRRRFSHWICLLLCAFSVAGLVLFLVQHNHHEDRVQRPVLDRNAKVEHFAKKSLNFTEEILGAKSFSRQLAQQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTFEEAEPIIKSLSSLIFKAQDVHYDIATTLVTMKSHIQALEERANAATVQSTVFAQISAEALPKSLHCLNVKLTADWLKTPSLQKLSDERRNSPGLMDHNLYHFCIFSDNVLATSVVVNSTVFNADHPQQLVFHIVTDAINYGAMQAWFLSSDFKGATMEVQNIEEFDWLNESYSPIVKQLLNPESRAFYFGAYQDLNIEPKLRNPKFLSLLNHLRFYIPEIYPQLEKIVFLDDDVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRFYKYLNFSNSIISSKIDPQACGWAFGMNVFDLVKWRKANVTARYHYWQEQNADGSLWKLGTLPPALLSFYGLIEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWHKYINQSHPYLQDCAIE* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5448 535 Pfam Glycosyl transferase family 8 234 509 IPR002495 GO:0016757
Lja1g5448 535 CDD GT8_like_1 230 523 - -
Lja1g5448 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 534 IPR029993 GO:0047262
Lja1g5448 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 531 IPR029044 -
Lja1g5448 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 533 IPR029044 -
Lja1g5448 535 PANTHER HEXOSYLTRANSFERASE 3 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5448 Lja-Chr1 92524510 92528697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5448 1 532 Glycosyltransferase AT2G20810 53.259 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5448 K13648 - gmx:100817381 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5448 1 92524510 92528697 Lja1g5448 1 92524510 92528697 ECH