Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5446 ATGGCAGAGAACAACGAGAAAGAAATCCAAATCCGAACCCTAACTGGTGAATCCACTACTCTTCACATCACTCCCTCCGCCACCGTCCAACACCTCAAGCTCCTCCTCAACCACTCATTCTCACCCGCCACAAACTCCCCAAATTTCCACCTCTTTTTCAAGGGTGAAAAATTGCGATTGCAGGCAAAGATTGGTTCTTACCCAATTCAACTAGGCGAGTTTCTCGTCCTGGTTCCCTTTTCCAAGAAGGATTCAACTTCAACCGGGACGCAAAACCCGGACCCGGTTCTCGATTCTTCAAATGTTGCTAACAGCGCCTCTGGTTCAACCTCTAACCTTGCTGATTCCACATGGTCTAATATCATGGAGGATTTGTCGCATTTGCGTGATGGCACCGCTGAATGTGGCGATAACAGTGCATCTAATTCAGAGTTTGGAGCATTTGCTTCTGAACCAAGTAAAGGGGGTTTAGGTTTAGGTTTAGGTTTAGGTCAGGAGAAGCAGATTGAGCTTCCTTATCATCTCATACTGAACACGCTGGATTGTACTTGCGTTTTCAGTGAGCATAATTGCGAGGTTTTTTCGAAGGTTTTGGAGTCTGTGAACTGTTTATCTGACCTGCCTCTGGGACACTGCAAGCTGTTGAGAAAAGCACGTTTGGAGGGAGCTTTTGTCAAGGGTGGTGTTACATGCTTGTGTCCACCATGGTTGAAGACAGTAGTAAAGGCGTTTGCTTTCATAAACATTTTCTCCGCGTTTCTTCATTTGCAGCGTCGAAACATTACTGCATTTTTACTGGAAGAGGCACTTAATCAGGTTGCCAAGTTTGGAGTCAAACTTGGTCTTCATGACGTGAAGCATCTTTCCCTTCTTTGTCCTAATCTAGTGTGTTTTGTGGATGAAGTAGAGAAGGCAAGTTTTGGTGATGTCATTGTTGTAGTTAACCATTCAACCAGTGATAAAGATCAAGTTGAAGATAATCCTAGTGGAGCTCGCAAGTGGTTGTCTGCTTCAAAGATTGTCAGTACATTGAAGAGAAGGGACAGTTCTTTCCGAAAATATCTAGGGTGGGCTTTTGAGCAGATGCCGTTTGAATTTGGAGATGAGATGGCAGTTGGAACTACCTTGGAAGAAATGCTTGCAGCAATTAAAGACCATAGTTTTGTTGGAAAAGAAAACAAATCAAAACGTGTAAAGAGAAGCTCAACTACTAAAAAACCTGACAACCACATTGGATGTCATGACACTAAATCATTACTGGCTGTGGACATGGTTGAACATCTTAAGAAAGGAATTGGATCTGAAGGACAGATTGTGTACATTGAAGACATATGTGCTAGAAAAGCCACTTTCAGCGAGATCCCAACTGAACTTTCAGAGAAAATGAGATCTGCACTGAAAAGCATTGGAATTTCCAAATTGTATAGTCACCAGGCAGACGCTATACAAGCCTCCCTTCATGGGAAGAATGTTGTTGTAGCTACAATGACATCTAGCGGCAAATCTCTTTGCTACAATCTGCCAGTTCTAGAAGAGTTGTTGAAGAATTCATCATCATGTGCTTTGTATATATTTCCAACAAAGGCATTAGCTCAAGATCAACTAAGAGCTTTGTTATACATGACAAAAGGATTTGATGTTGACTTAAATATTGGTATATATGATGGTGACACGTCTCATAGTGAGAGGACATGGTTACGTAGTAACTCTAGACTGTTGATCACAAATCCAGATATGTTACACATATCAATCTTGCCCCACCATCGGCAATTTAGTCGGGTTTTATCAAATCTGAGGTTTGTGGTCATTGATGAAACTCATACGTACAAGGGAGCATTTGGAAGTCATACTGCCCTTATATTAAGAAGGCTAAGGAGACTCTGTTCACATGTATATGGAGCCGTTCCTTCTTTTGTTTTTTCTACTGCGACTTCAGCAAATCCTCTTGAGCATTCTATGGAACTTGCAAATTTACCAACCCTGGAGCTATTTCAGAACGATGGCAGTCCATCTGCCAGGAAACTTTTCATCCTTTGGAATCCTATTCTTCGTCCAAAAGATATCTTGAAGAAAGCTCAGTTTGCAATTGGTAATAATGAGTTGGCAGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATTGTGGATGTTTCACGCCTTTTTGCAGAAATGGTTCAGCATGGCCTTCGCTGCATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTTGTTTTATGCTATACACGCGAAATTCTTCACGACACAGCCCCGCATCTAGTGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGAAAGATAGAGAGTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGGGAAATTGATGTCACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTGTGGCAACAAGCTGGAAGAGGTGGGAGGAGAGATAGACCATCCCTTGCTGTCTATGTTGCATTCGGTGGGCCACTTGATCAATACTTCATGAAAAATCCTAAGAAACTTTTTGAGAGACCGATTGAATGCTGTCATATTGATTCCAGAAACAAGCAGGTTCTTGAGCAACATATGGCCTGTGCAGCTCTTGAACACCCTCTGAATGTGCATTATGATGAGAAGTACTTTGGCTCTTGCTTAGAAAGTGTTTTGATTTCTCTAAAAGCGAGAGGATACTTGAGATTTGATCTGTCATCGGTTCCTTCTTCTAGAATATGGCACTACATTGGTCCAGAGAAATCACCTTCACAAGCAGTCAATATCCGTGCAATAGAAACGGTAAGATACAGTGTCATAGATCAGAAAAAAAATGAAGTCCTTGAAGAGGTAGAGGAAAGCAAGGCTTTCTTTCAGGTATATGAAGGCGCTGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTATCTAACAAAACTGCTTTTTGCAAAGAGGCTGATCTGAAGTATTATACGAAGACACGGGATTATACTGATATTCATGTCATTGGGGGTAATATTGCTTATCCAGTAAAAGTTTCCACTAACATGCTTCCAAAAACAAATGCTCGAGCTCATGTATGCAAAGTAACTACTACTTGGTTTGGATTTTATCGCATTTGGAGAGGAAGCAATCAAATCTTTGATACTGTTGACCTAGCTCTTCCTCAATATTCATACGAGTCGCAGGCAGTTTGGATTCCAGTGCCACAGTCAATAAAAGAAGCAGTAGTCAAGCAAAATTATGATTTCCGTGGAGGTTTGCATGCTGCTTCACATGCTGTTTTACACGTAGTGCCTTTACATATAACATGCAACATGTCTGACTTGTCTCCTGAGTGTCCAAATCCCCACGATAGCCGATATTACCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGGTCTGGAATTTCAGTTCAGGTTCAACCCTATTTCACGAAGTTCCTAGCAGCTGCGCTAGAAGTTCTCACATCTTGCTGCTGCTCAGCGGAAGTAGGTTGCCCTAGTTGTATTCAGAGCTTTGCATGCCATGAGTATAACGAGGTTTTACACAAGGATGCAGCCATTATGATCATCAAGGGGATTTTGGATGCAGAGAGCTAG 3657 0.4173 MAENNEKEIQIRTLTGESTTLHITPSATVQHLKLLLNHSFSPATNSPNFHLFFKGEKLRLQAKIGSYPIQLGEFLVLVPFSKKDSTSTGTQNPDPVLDSSNVANSASGSTSNLADSTWSNIMEDLSHLRDGTAECGDNSASNSEFGAFASEPSKGGLGLGLGLGQEKQIELPYHLILNTLDCTCVFSEHNCEVFSKVLESVNCLSDLPLGHCKLLRKARLEGAFVKGGVTCLCPPWLKTVVKAFAFINIFSAFLHLQRRNITAFLLEEALNQVAKFGVKLGLHDVKHLSLLCPNLVCFVDEVEKASFGDVIVVVNHSTSDKDQVEDNPSGARKWLSASKIVSTLKRRDSSFRKYLGWAFEQMPFEFGDEMAVGTTLEEMLAAIKDHSFVGKENKSKRVKRSSTTKKPDNHIGCHDTKSLLAVDMVEHLKKGIGSEGQIVYIEDICARKATFSEIPTELSEKMRSALKSIGISKLYSHQADAIQASLHGKNVVVATMTSSGKSLCYNLPVLEELLKNSSSCALYIFPTKALAQDQLRALLYMTKGFDVDLNIGIYDGDTSHSERTWLRSNSRLLITNPDMLHISILPHHRQFSRVLSNLRFVVIDETHTYKGAFGSHTALILRRLRRLCSHVYGAVPSFVFSTATSANPLEHSMELANLPTLELFQNDGSPSARKLFILWNPILRPKDILKKAQFAIGNNELADESANFVRSSPIVDVSRLFAEMVQHGLRCIAFCKSRKLCELVLCYTREILHDTAPHLVDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASLWQQAGRGGRRDRPSLAVYVAFGGPLDQYFMKNPKKLFERPIECCHIDSRNKQVLEQHMACAALEHPLNVHYDEKYFGSCLESVLISLKARGYLRFDLSSVPSSRIWHYIGPEKSPSQAVNIRAIETVRYSVIDQKKNEVLEEVEESKAFFQVYEGAVYMCQGKTYLVEKLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVKVSTNMLPKTNARAHVCKVTTTWFGFYRIWRGSNQIFDTVDLALPQYSYESQAVWIPVPQSIKEAVVKQNYDFRGGLHAASHAVLHVVPLHITCNMSDLSPECPNPHDSRYYPERILIYDQHPGGSGISVQVQPYFTKFLAAALEVLTSCCCSAEVGCPSCIQSFACHEYNEVLHKDAAIMIIKGILDAES* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5446 1218 MobiDBLite consensus disorder prediction 85 114 - -
Lja1g5446 1218 ProSiteProfiles Ubiquitin domain profile. 7 78 IPR000626 GO:0005515
Lja1g5446 1218 CDD DEXHc_Hrq1-like 474 655 - -
Lja1g5446 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 716 872 IPR001650 -
Lja1g5446 1218 SMART helicmild6 750 831 IPR001650 -
Lja1g5446 1218 SUPERFAMILY Ubiquitin-like 5 94 IPR029071 -
Lja1g5446 1218 Pfam DEAD/DEAH box helicase 476 645 IPR011545 GO:0003676|GO:0005524
Lja1g5446 1218 Gene3D - 446 661 IPR027417 -
Lja1g5446 1218 CDD Ubl_ubiquitin_like 9 78 - -
Lja1g5446 1218 Pfam Helicase conserved C-terminal domain 723 829 IPR001650 -
Lja1g5446 1218 Pfam Ubiquitin family 9 78 IPR000626 GO:0005515
Lja1g5446 1218 Gene3D - 8 94 - -
Lja1g5446 1218 CDD SF2_C_Hrq 676 840 - -
Lja1g5446 1218 SMART ultradead3 470 676 IPR014001 -
Lja1g5446 1218 Gene3D - 709 889 IPR027417 -
Lja1g5446 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 482 663 IPR014001 -
Lja1g5446 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 838 IPR027417 -
Lja1g5446 1218 PANTHER ATP-DEPENDENT HELICASE HRQ1 20 1217 - -
Lja1g5446 1218 Pfam MrfA Zn-binding domain 1107 1189 IPR018973 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5446 - - gmx:100819522 1961.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5446 1 92472184 92498654 Lja1g5446 1 92472184 92498654 ECH