Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5439 ATGAAGAGAGGGAAGGTGGTTTGGGAAGGGTTGATGATGATGGGTTTGAAGGGGGAGAGTAACAACAACAGCAGCAAGGTTGAGAAGCTCAAGAACACGGTGGTGTCGGTGTCGTCGAAGTCGTCAAGGATGAAGCTGTGGATCATACGCGCCACCACATCGGTGTTACTGTGGACCTGCATCGTTCAGTTAACTGCTTTGGGTGACATGTGGGGGCCGAGAGTTTTGAAAGGATGGCCTTCTTGTTTCAACCATGAAACCGAATCCGCACTCCTCGAGTTGCCTTCTGTGCGCCCCAGAGTTCTACCACCTAAGAGGGTTTATAAAAACAACGGTTACCTGATGGTGTCGTGTAATGGAGGGTTGAACCAAATGAGATCAGCAATATGTGACATGGTGGCCATTGCAAGATATTTAAATGTCACGCTTATAGTCCCTGAACTGGATAAAGCATCCTTTTGGGCTGACCCCAGTGAGTTCCAAGACATATTTGATGTGGCTCATTTTATTACATCCTTGAGAGATGAGGTGCGGATACTGAAAGAGTTGCCTCCGAGACTCAAGCTGAAAATGGAAAGCGGGTTACTTTACAGCATGCCGCCTATTAGTTGGTCTGACATGTCTTACTATAAGAACCAGATTCTACCTTTGATACAAAAGCACAAAGTTCTCCATTTAAATCGAACAGATGCTCGGCTGGCCAATAACGGCCAATCTTTAGAGATTCAGAAGCTGCGTTGCCGAGTCAATTTCAGTGCTCTTAGATTTACTCCTCAGATTGAGGAGCTAGGCAGAAAGGTGATCGAGCTTCTGAGGCAAAATGGGCCGTTTCTTGTGCTTCATCTGAGGTATGAGATGGACATGTTGGCCTTTTCTGGCTGTACTCAAGGCTGCAACACTGACGAGGTTGATGAATTGACAAGGATGAGATATGCTTATCCATGGTGGAAAGAAAAAATAATCAATTCTGATTTGAAAAGAAAAGATGGTTTATGTCCTTTAACGCCCGAGGAGACTGCCCTCACGCTTAGGGCCCTTGACATTGATCAAAGCATTCAAATCTACATTGCAGCCGGGGAAATATATGGTGGGGACCGGAGAATGGCCAGTCTTGTGAAGAACTATCCAAATTTGGTCAGAAAAGAAACGCTGTTGGAACCTTCTGACCTTCAGTTCTTCCAAAATCATTCCTCCCAGATGGCAGCATTGGATTATCTTGTCTCATTAGAGAGTGATATCTTTGTCCCTACATATGATGGCAATATGGCCAAAGTAGTTGAGGGCCATCGCAGATATCTTGGCTTCAAGAAGACAATTTTATTGAACAGAAAGGTCCTAGTTGATTTGATAGACCAATACAATTACGGGGTATTGAACTGGGATGAATTCTCTTCAGCTGTGAAGGAAGCTCATGCTGATCGCATGGGTAACCCAACTAAAAGATCAGTAATCCCAGACAGGCCGAAAGAAGAGGATTATTTCTATGCCAATCCAGAGGAGTGTTTAGGACTATCAGATGATCTGTTGAGTAGTGCAGAGTAA 1542 0.4468 MKRGKVVWEGLMMMGLKGESNNNSSKVEKLKNTVVSVSSKSSRMKLWIIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFNHETESALLELPSVRPRVLPPKRVYKNNGYLMVSCNGGLNQMRSAICDMVAIARYLNVTLIVPELDKASFWADPSEFQDIFDVAHFITSLRDEVRILKELPPRLKLKMESGLLYSMPPISWSDMSYYKNQILPLIQKHKVLHLNRTDARLANNGQSLEIQKLRCRVNFSALRFTPQIEELGRKVIELLRQNGPFLVLHLRYEMDMLAFSGCTQGCNTDEVDELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLRALDIDQSIQIYIAAGEIYGGDRRMASLVKNYPNLVRKETLLEPSDLQFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKKTILLNRKVLVDLIDQYNYGVLNWDEFSSAVKEAHADRMGNPTKRSVIPDRPKEEDYFYANPEECLGLSDDLLSSAE* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5439 513 PANTHER OS02G0726500 PROTEIN-RELATED 17 506 - -
Lja1g5439 513 Pfam GDP-fucose protein O-fucosyltransferase 113 433 IPR019378 -
Lja1g5439 513 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 17 506 - -
Lja1g5439 513 PIRSF UCP009360 12 499 IPR024709 -
Lja1g5439 513 CDD O-FucT_plant 113 438 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5439 Lja-Chr1 92347300 92352479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5439 109 502 Miscellaneous Gene Families AT2G37980 50.253 1.24e-133 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5439 K23280 - gmx:100778901 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5439 1 92347300 92352479 Lja1g5439 1 92347300 92352479 ECH