Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5437 ATGACGGTGGTTCGGCCACACGTGCTGGTGATTCCGTTCCCAGCACAAGGCCACATGATACCCCTCCTCGACCTCACCCACAAGCTCGCCGCCGCCGCCGACAGCAACCTCACCATCACGGTGCTCACCACCCCAAAGAACCAAACCTTCCTCACCCCACTCCTCTCAGCTCACCCTTCCACCATCCACTCCTTGCTCCTCCCCTTCCCCTCCCACCCCTCCCTCCCTCCCGGCATCGAAAACGCCAAAGACATGCCAAACTCCTTACGCACCATCCTCCTCTCCTTCTCAAATCTCCACCAACCCCTCCTCCACTGGTTCAATTCCCACCCTTCCCCTCCCCAATTCATCATCTCCGACATGTTCTGCGGTTGGACCCAAAACCTCGCCGAACAACTAAACATTCACAGAATCGTCTTCTCCCCTTCCGGCGCTTTCGCCTACTCCACCTTCTACTACCTCTGGAACCACCTCCCCAAACGCGTTAACCCCACAGACAAAAACGAGATCGTTTCTTACCACGGCCTCCCGAATTCCCCTAAGTATCCCTGGTGGCAAGTCTCGCCGTTGTTCCGAAGCTACGTCGACGGCGATCATGACTCCAAGCTAGTCAAGGATTGGTACCTCGGTAACATGAAGAGTTGGGGACTCGTCGTAAACTCGTTCTCGGAGTTCGAGAAGCCTTATCTCGATTACCTCAAGAAAGAGCTCGGGCATGATCGTGTGTGGGCGGTGGGACCGTTGCTCCCGGTGAACGACACGTTCGCCGCCGGGAGAGGTGGGTCCAGCTCTCTCTCCGTCGACGATGTCGTTTCGTGGCTTGACCAACGACGGGAACGTGAAGTGGTGTATGTCTGTTTCGGGAGCCAAACGTTTCTCACCGATGAACAGACGGCGGCGATTGCATCGGGGCTGGTGAAAAGTGGGGTTCACTTTGTCTGGTCGATAAAGGAGCGCGTGAACGTGAACAACGGAGACGACGGCGACGACGACGGTTGCGATGATTGGTCGGCGGGGTTAGATGAAAGTCGCGGCCTGGTGATTAGGGGGTGGGCCCCGCAGGTGGTGATACTGAGGCATAAGGCGGTGGGCGCGTTTTTGACTCACTGCGGGTGGAACTCGGTGGTGGAATCGGTGGTTGCTGGGGTGCCGGTGCTTGCGTGGCCGATGTCTGCGGACCAGTTTGTGGATGCAACGTTGCTTGTGGAGGAGTTGAAGGTGGCTGAGAAGGTGTGCGAAGGTGAAAAAACCGTTCCTGACTCGGACCTGCTGAGTCGAGTTCTAGCTGAGTCGGTTGGCGGAACCGGTGAGGAAACGAGGAAGAAGATGTTGGAACTGCAGGCCAAGGCCGTTGACGCCATTGGAGAGGGTGGCAGTTCCGACAAAGATTTGGGGTGCTTGATGGAACATCTTCAGATTTCCCTTAAGTATGACGTGTCGTAG 1443 0.5683 MTVVRPHVLVIPFPAQGHMIPLLDLTHKLAAAADSNLTITVLTTPKNQTFLTPLLSAHPSTIHSLLLPFPSHPSLPPGIENAKDMPNSLRTILLSFSNLHQPLLHWFNSHPSPPQFIISDMFCGWTQNLAEQLNIHRIVFSPSGAFAYSTFYYLWNHLPKRVNPTDKNEIVSYHGLPNSPKYPWWQVSPLFRSYVDGDHDSKLVKDWYLGNMKSWGLVVNSFSEFEKPYLDYLKKELGHDRVWAVGPLLPVNDTFAAGRGGSSSLSVDDVVSWLDQRREREVVYVCFGSQTFLTDEQTAAIASGLVKSGVHFVWSIKERVNVNNGDDGDDDGCDDWSAGLDESRGLVIRGWAPQVVILRHKAVGAFLTHCGWNSVVESVVAGVPVLAWPMSADQFVDATLLVEELKVAEKVCEGEKTVPDSDLLSRVLAESVGGTGEETRKKMLELQAKAVDAIGEGGSSDKDLGCLMEHLQISLKYDVS* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5437 480 Gene3D Glycogen Phosphorylase B; 4 263 - -
Lja1g5437 480 CDD GT1_Gtf-like 6 455 IPR002213 GO:0008194
Lja1g5437 480 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 276 401 IPR002213 GO:0008194
Lja1g5437 480 ProSitePatterns UDP-glycosyltransferases signature. 351 394 IPR035595 -
Lja1g5437 480 PANTHER GLYCOSYLTRANSFERASE 4 470 - -
Lja1g5437 480 PANTHER UDP-GLYCOSYLTRANSFERASE 89A2 4 470 - -
Lja1g5437 480 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 471 - -
Lja1g5437 480 Gene3D Glycogen Phosphorylase B; 268 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5437 Lja-Chr1 92334870 92336501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5437 5 471 Glycosyltransferase AT1G73880 55.769 1.29e-178 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5437 - - lja:Lj1g3v0579600.1 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5437 1 92334870 92336501 Lja1g5437 1 92334870 92336501 ECH