Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5436 ATGAAAGCTCGGTCGCTCAAACTCAGGGAGGTCCACGCCCCCAAGGATGGCAGCCCCTCCTTCTGCTCCGTCGTGTGGGACCACCAAGCCCACCGTCTCGTCACGGCCTCCTCTTCCCACTCCGCTGTCTCCATTCACGACCCTCTTTTCCCCTCCGTCTCTCCCAAGATCCTCCGCCACCACCGTGAGGGTGTCACCGCCTTGGCTCTCAGCCCTAACTCCACTTGCCTCGCTTCCGGATCTGTCGATCACTCTGTCAAGCTCTACAAATTTCCCAGTGGAGAGTTTGAGACAAATATTACCCGGTTTACACTTCCAATACGCTCACTAGCATTTAACAAGTCAGGGAGCATGTTGGGAGCGGCAGGTGATGATGAGGGTATCAAGCTCATAAACACGGTTGATGGTTCCATCGCGAGGGTCCTCAAGGGGCATAAAGGGACTGTCACATGCTTAGCTTTCGACCCGAATGGTGAATACTTAGCATCACTGGATTCAACTGGAACTGTTATTATCTGGGAACTCCACTCTGGGAGGATCATTCACAACCTCAAAGGCATCGCTCCTGACACTGGGGCGGATGTTTCAACCATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCCGGGTTGAGAAATGATGTGGTTATGTATGACAGGGACACGGCTGAGAAGTTGTTTTCTCTGAGAGGGGATCACACTAAGCCCATATGTTTCTTGTGTTGGTCACCCAATGGAAAGTACATGGCTACCTCTAGTTTAGACAAGCAGCTTCTGATATGGGATGTTAACAAGAAGCTGGACATTGATAGGCAGAAGTTTGATGAAAAAGTTTGTTGCATGGCGTGGAAGCCAATTGAGAATGCCTTAGCTGTTATTGATGTTATGGGAAAGTATGGTATCTGGGAGAATGTTATACCTTCATCCATGAAGTCTCCAACTGAGGATATACCTAAGCAGAACAGGACAAGCAATGGGCTTCTTTTGTTTGATGAGGAGGATCCAGAGAATAGTGCAAGTGGGAGCTTGAGTGATATTGGTGAAAATAGCAATGATGAGTCTGAGCCACCTTCCAGAAAAAGATTGCGTAAACAGTCTTTGAGCGAGGAGAATTTAGATGAGGATGGAGGTGATGAATTGGATTTGTTTCCCAAGGTTGAGTCTCACAAGAAGCGAAATCGCACAGACAAGGAAAATTTGGATAATGGGAATCTGGGAATTACAAGCACGATGGTAACAGCTAAGACAAAGATGCAGGAGGCATTTCAACCAGGGTCCACTCCTGTGCAGCCGGGGAAAGGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACAACTTTTGAACGTGATGGATACTCTCATATTGAGATTGATTTTCATGATACTGGAAGCTGTCCACGAGTTCCATCAATGACTGACCATTTTGGATTTTCAATGGCCGCATTGAATGAGGAGGGGAGCGTCTTTGCGAATTCATGCAAAGGGGAGAAGAACATGAGCACCGTCATGTATCGCCCATTTAAGAGTTGGGCCAGTAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGCTGTTGCACTTGGTACTGCTTGGGTGGCTGCAATAACTAGTTTTAACTATCTTCGCATCTTTACCGAAGGTGGTTTGCAGAGGCATATTATTTCGCTAGATGGGCCAGTGGTGACTGCATCAGGTTTCAATGATAAGCTTGCAGTTGTGACTCATGCTTCTGATTGCCTCTCTACAAATGATCAGGTCTTGAAGTTTAGAGTATTTAATATACCTCATGGGACCCAACCCCTTCAGGGTAGCTTGCCATTAACCCCTGGTTCTACACTAAGTTGGTTTGGGTTTAGTGAAGAAGGGCAATTGTGTTCGTACGATTCCAAGGGTGTGCTCAGATTATATACAAGCCAATTTGGTGGTAGCTGGCTCCCAGTATTCAGTGCTATGAAAGAGAAGAAGCCAGATGAAAACTATTGGGTGGTGGGGTTGAATTTAAGCAAGTTGTTTTGTGTGGTATGCAAGAAGCCTGACACCTTTCCAGAGGTGATGCCTAGACCAGTTTTTACTCTGCTGAATCTTTCATTTCCTCTTGCTTCCTCTGATTTGGGGTCCGAAGCCCTTGAAAATGAGTTTATCATGAACAGCATGTATCTCTATGAGGTTCAGAAAAGAATGGAAGAAACGGCTATTGCTGGTTTGGACACGTCTTCGCTTGATGATGATGCTTTCAATTTAGAAGCAGCACAAGATAAATGCGTACTTAGGCTTATAGCATCCTGTTGTAACAGTGATAAGCTTGCTCGGGCTACTGAACTCATGAAGCTTTTGTCACTGGAAAAATCAATGAAAGGAGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAACTTGGCAGAAAAGTTCAGCAACATATTGGAGGAAAGGTTACTAATTGAAGAGAAAAAAACTGTGGAAACCAACGTCAAAGAAAAGTGTCTTGCACCGATTACACCTGATGCTCAATTTAGCGGAAGCAAGTCCTCAACTCAGAATGAAACATTAAAACCAGTTACGCTGCAATCATCTCCAAAATTATCTGCTCCGTTGTTCACAAAGAAAGACAAAACACTAGAGGGGGCTAAAGCTGGAAAAAATAAAACAGCAACGGTGAATGAAGGTCTGAAGTTAAAGCCTATGCAAGCTCCTCAGCCACAGGATCCTTCTATAAAATTACCAAATAAACCTGGAGTTAACAAGTCATCAGAGGCTAGTTTGGAACCACCAAAAAGACCGTCCAATCCATTTTTGAAGTCTTCTATCAAGTGA 2835 0.4497 MKARSLKLREVHAPKDGSPSFCSVVWDHQAHRLVTASSSHSAVSIHDPLFPSVSPKILRHHREGVTALALSPNSTCLASGSVDHSVKLYKFPSGEFETNITRFTLPIRSLAFNKSGSMLGAAGDDEGIKLINTVDGSIARVLKGHKGTVTCLAFDPNGEYLASLDSTGTVIIWELHSGRIIHNLKGIAPDTGADVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTKPICFLCWSPNGKYMATSSLDKQLLIWDVNKKLDIDRQKFDEKVCCMAWKPIENALAVIDVMGKYGIWENVIPSSMKSPTEDIPKQNRTSNGLLLFDEEDPENSASGSLSDIGENSNDESEPPSRKRLRKQSLSEENLDEDGGDELDLFPKVESHKKRNRTDKENLDNGNLGITSTMVTAKTKMQEAFQPGSTPVQPGKGRFLCYNMLGSITTFERDGYSHIEIDFHDTGSCPRVPSMTDHFGFSMAALNEEGSVFANSCKGEKNMSTVMYRPFKSWASNSEWSMRFEGEEVKAVALGTAWVAAITSFNYLRIFTEGGLQRHIISLDGPVVTASGFNDKLAVVTHASDCLSTNDQVLKFRVFNIPHGTQPLQGSLPLTPGSTLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWLPVFSAMKEKKPDENYWVVGLNLSKLFCVVCKKPDTFPEVMPRPVFTLLNLSFPLASSDLGSEALENEFIMNSMYLYEVQKRMEETAIAGLDTSSLDDDAFNLEAAQDKCVLRLIASCCNSDKLARATELMKLLSLEKSMKGAIKLVTALKLPNLAEKFSNILEERLLIEEKKTVETNVKEKCLAPITPDAQFSGSKSSTQNETLKPVTLQSSPKLSAPLFTKKDKTLEGAKAGKNKTATVNEGLKLKPMQAPQPQDPSIKLPNKPGVNKSSEASLEPPKRPSNPFLKSSIK* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Lja1g5436 944 MobiDBLite consensus disorder prediction 382 403 - -
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 4 47 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 135 174 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 226 266 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 93 132 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 51 90 IPR001680 GO:0005515
Lja1g5436 944 SMART WD40_4 177 223 IPR001680 GO:0005515
Lja1g5436 944 MobiDBLite consensus disorder prediction 843 863 - -
Lja1g5436 944 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Lja1g5436 944 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Lja1g5436 944 MobiDBLite consensus disorder prediction 879 944 - -
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 95 - -
Lja1g5436 944 MobiDBLite consensus disorder prediction 336 409 - -
Lja1g5436 944 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 903 - -
Lja1g5436 944 MobiDBLite consensus disorder prediction 356 375 - -
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Lja1g5436 944 CDD WD40 22 296 - -
Lja1g5436 944 MobiDBLite consensus disorder prediction 842 863 - -
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 268 IPR001680 GO:0005515
Lja1g5436 944 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Lja1g5436 944 MobiDBLite consensus disorder prediction 341 355 - -
Lja1g5436 944 Pfam WD domain, G-beta repeat 57 89 IPR001680 GO:0005515
Lja1g5436 944 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Lja1g5436 944 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Lja1g5436 944 Gene3D - 53 308 IPR015943 GO:0005515
Lja1g5436 944 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5436 114 307 Miscellaneous Gene Families AT5G08390 21.538 1.93e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5436 K11274 - gmx:100818807 1437.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5436 1 92296312 92301437 Lja1g5436 1 92296312 92301437 ECH