Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5432 ATGTCGACACTGCTTCTTCTACCCACTCCTCCCTTCACCTCCATACACCGCCGCAGCAACACCACATTATCATCATCATCCTCTGCTTCCCTTTCTCTTCTTCCCTCTCATCACCACCCTCTCACTCTCCCACGCTTCCATTCCACCGCGCGCAGAGGTAACCTTTCCCTTCTTCGTCGTGCCGTCGATTCTTCCTCCTTCTCCGACCCTAAAACCGAAGAAGCAGCAGAACAAGATGAAGGTTCCGTCAACAGTGAAACTGTTCGGCTCGCCGACGAGGATTATCCCAGTGGCGAGTTCGAATTCGAAGCCATTACTGGATGGAGAAACTTCCTCGTTAAGGTTAAGATGCTCTTCGCCTACCCCTGGGAGCGTGTTCGCAAAGGCAGCGTCCTCACCATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGATTCTCTCCGGGACTTTCTCTGCCCCAAATCTGTGAGAATTTCGTGAAAGCAGCCTACGATCCTCGAATTTCCGGAATATATCTTCATATAGAGAGTTTGAACTGTGGCTGGGGTAAAGTTGAAGAAATTCGAAGACACATTTTGAATTTCAAAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTCTTTGTCAAGAAAAAGAATATTACCTTGCGTGTGCATGTGAAGAGATATATGCCCCTCCAAGTGCTTACTTTTCTTTGTTCGGATTGTCTGTTCAAGCCTCATTTCTCAGAGGAGTTTTAGATAACATAGGAATTGAACCTCAAGTGGAAAGGATTGGCAAATACAAAAGTGCAGGAGATCAACTAGCTCGAAGAAGCATATCTGAAGAAAATTATGAGATGTTGACTGCATTGCTTGATAACATCTATACAAATTGGCTGGATAAAGTCTCTTCTGTCAAAGGAAAGAGGAGAGAAGATATTGAGAGCTTCATAAATGAAGGTGTTTATCAAGTTGACAAGCTCAAAGAAGAGGGCCTCATATCAAATGTAATTTATGATGATGAGGTTATAGCCATGTTGAAGGAGAGACTTGGAGTGAAAACAGATAAAGATCTGCCTATGGTAGATTACAGGAAATACTCTCGTGTTAGGAAATGGACAGTTGGTATTTCAGGTGGTAAAGATCTGATAGCCATCATCCGAGCCTCAGGAAGCATTAGTCGTGTTGAGAGTCAATTTAGTGCCTCTAGCTCAGGCATCGTTGCAGAGAAGTTCATTGAGCAGATTCGTAAAGTCAGAGAGTCAAAAAAATTTAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATCTGATGTGGAGAGAAATTCGACTTTTGGCTGCGTCAAAACCAGTCATTGCTTCAATGGCTGACGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCTCAAGCTATTGTCGCTGAAAGTCTTACCTTAACTGGTTCAATTGGAGTTGTCACAGGAAAATTTAACCTAGAGAAACTGTATGAGAAGATTGGCTTTAACAAAGAAATCATATCAAGAGGAAGATATGCTGAGGTTCTTGCTGCTGAACAACGCCCTTTTAGACCAGATGAAGCAGCACTATTTGCCAAATCTGCACAACATGCTTATAAACAATTTCGAGACAAGGCAGCTTTATCCAGATCAATGGCTGTTGATAAGATGGAGGAGGTGGCCCAAGGGAGGGTTTGGACTGGTAAAGATGCAGCTTCACATGGTTTGGTTGATGCTCTTGGTGGGCTTTCACGTGCTATTGCCATAGCGAAATTGAAGGCCAATATTCCTCAAGACAGTCAGGTTTTTTTCTTAGATCACCTCTATTAG 1839 0.4367 MSTLLLLPTPPFTSIHRRSNTTLSSSSSASLSLLPSHHHPLTLPRFHSTARRGNLSLLRRAVDSSSFSDPKTEEAAEQDEGSVNSETVRLADEDYPSGEFEFEAITGWRNFLVKVKMLFAYPWERVRKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFVKAAYDPRISGIYLHIESLNCGWGKVEEIRRHILNFKKSGKFVVAYVPLCQEKEYYLACACEEIYAPPSAYFSLFGLSVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRSISEENYEMLTALLDNIYTNWLDKVSSVKGKRREDIESFINEGVYQVDKLKEEGLISNVIYDDEVIAMLKERLGVKTDKDLPMVDYRKYSRVRKWTVGISGGKDLIAIIRASGSISRVESQFSASSSGIVAEKFIEQIRKVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASGGYYMAMGAQAIVAESLTLTGSIGVVTGKFNLEKLYEKIGFNKEIISRGRYAEVLAAEQRPFRPDEAALFAKSAQHAYKQFRDKAALSRSMAVDKMEEVAQGRVWTGKDAASHGLVDALGGLSRAIAIAKLKANIPQDSQVFFLDHLY* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5432 612 PANTHER PROTEASE 4 34 605 - -
Lja1g5432 612 SUPERFAMILY ClpP/crotonase 121 338 IPR029045 -
Lja1g5432 612 MobiDBLite consensus disorder prediction 66 86 - -
Lja1g5432 612 Gene3D - 524 610 - -
Lja1g5432 612 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 380 593 IPR004635 GO:0006508|GO:0008233
Lja1g5432 612 SUPERFAMILY ClpP/crotonase 373 585 IPR029045 -
Lja1g5432 612 Gene3D - 273 365 - -
Lja1g5432 612 Gene3D - 129 272 - -
Lja1g5432 612 CDD S49_SppA_67K_type 132 345 - -
Lja1g5432 612 Gene3D - 375 523 - -
Lja1g5432 612 PIRSF Protease_4_SppA 72 610 IPR004634 GO:0006465|GO:0008233|GO:0016021
Lja1g5432 612 Pfam Peptidase family S49 448 598 IPR002142 GO:0006508|GO:0008233
Lja1g5432 612 Pfam Peptidase family S49 197 349 IPR002142 GO:0006508|GO:0008233
Lja1g5432 612 CDD S49_Sppa_N_C 380 594 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5432 Lja-Chr1 92242499 92259920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5432 K04773 - gmx:100781522 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5432 1 92242499 92259920 Lja1g5432 1 92242499 92259920 ECH