Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5399 ATGGCGGAACCTTACCCAAGGCTAGTAGCCCAAACTCACATAATAGCACCACCAACACCCACCGCCACCACTTCACTACTTCGAACGCTTCTTCAAGAGCGCGTGTCAAACTCAAAGCAACTCTTCGGCGTCTTCACCCTTCTGATAACCGTGACCATTTCGCTCATACTCACCGGCCTCACCGTCGTTGTAGCCATTCTCGGCCTGATTGTTTTCGCTCCAGTGATCATCGTTTTGAGCCCGATATGGGTCCCGGCTTGCGCCGCGCTCTTCCTCGTCACAGCGGGGTTCCTTTGTACGTGCGGGTTTGGGCTTGTTGTCTTCGCTGTGCTCACGTGGATGTACCGTTACTTCAGAGGGCTCCACCCTCCCGGTTCGGACCGAGTAAGCTATGCGCGTTACCCGGTTTATGAACCGGCGAGTCATGGTGGAGCTGGAGGGTATTTGCTGCATAGCAAGGTGGTGGAATCTGCTGCGCCTGGAGCTTGA 489 0.5542 MAEPYPRLVAQTHIIAPPTPTATTSLLRTLLQERVSNSKQLFGVFTLLITVTISLILTGLTVVVAILGLIVFAPVIIVLSPIWVPACAALFLVTAGFLCTCGFGLVVFAVLTWMYRYFRGLHPPGSDRVSYARYPVYEPASHGGAGGYLLHSKVVESAAPGA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5399 162 Pfam Oleosin 40 142 IPR000136 GO:0012511|GO:0016021
Lja1g5399 162 PANTHER OLEOSIN 24 162 IPR000136 GO:0012511|GO:0016021
Lja1g5399 162 PANTHER F27J15.22 24 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5399 Lja-Chr1 90468940 90469615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5399 1 162 Lipid Metabolism Gene Families AT3G18570 38.372 2.43e-25 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5399 - - gmx:100809872 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5399 1 90468940 90469615 Lja1g5399 1 90468940 90469615 ECH