Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5336 ATGTTGAGGTTACATGTGTGTGTATTGGAAGCGAGAGACTTACCCGCCGTGAAGGACTCTTATTATTTTGTGAAGCTTAAACTTGGGAAATCCAAGTCCAAGACTTGTATGGTATTGACGAACACGAACAACCCTGTTTGGAACGAGGAGTTTGTTTTCAAGGTGCGTGATCAGGACGTGCTTGTTGTCTCTGTTCTAAACAGTCATCATTTTCTTCTGGGTGAGGTGCGGATTCCTGTTAAGAAGCAATTAACCTTGCAGCCAACGTGGTTCTCCCTTCAGACTGACAAGTTTCTCAACAAGTATTGTGGGAAAATTCTTCTTGCCATTTCTCTTTATGGTAAAAGCCACACTTCTTTAATCAATCATAAACATTCTCCAAATTCAAATATTTCAATTGAGGACTCTAAAGACTTCAAAGGTTTGAAGATTTTATCCAAGGCACCTTATTGCAAAATGGGTGAAGGCAAACAGTTGTTTAAGGTTATTGCTAATCGTCTTGACAGAATTTTCAATAAGAAAGAAGGAAACTCAGCAAAACCAGGAGATTCTTCAGAAATATCCACTTCATTATCTGACTTTGAAGACATTGCACATGCAAATGAAAATTCATCCCCTTGCAGCTTTGAAGGAGCTATTGCGCAAATGGAATCGAGACATGACAAACAAGAAATGCCTGAAAATTTGCATGGTGGTGTATTAGTAGATCAGATCTACGCAGTGTCTCCTCACGATCTAAATGCCATTCTTTTCGCACCAGATTCACAGTTCAGGAAAGATTTAGCAGAACTACAAGGAACAAAAAATATGCAAGAGGGGCCTTGGACATGGAAAGATGGAGACATGTCTCGTTTGGCCCGAGTTGTTTCCTTTACAAAGGCTGCTACAAAGTTGTTTAAGGCTGTTAATGCCACTGAGGAACAAACCTACATTAGAGTGGCTAAAGAGGAATTTGCAGTACTTGTTAGTGTTAACACACCTGAAGTTCCATATGGGAACACATTTCAGGTTGAACTTCTTTACAAGATAATGCCTGGAGGAGAGTTATCTGATGAAGAGGAATCCTCTCATCTTGTTATTTCATGGGGCATTATCTTCCTTCAAAGCACAATGATGAAAGGCATGATAGAATCTGGGGCTAAACAAGGATTGAAGGATAGTTTTGACCAGTTCTCAAACCTACTTGCACAGAGATTCAAGGTGCTAGATAAGGCTGATTTATCAGACAAGAAACACTTGTTGGCAACTTTGCAAACAGAAGACCAGTGGCATTGGTGGCAGGCAGCAACATATTTTTGGAATTTCACTTTTGTTTCAACCCTTTTAATGTTTTTGTATGTGTTGGTTCATATTTTGAGGTGTGGTCCAAGTCATCCTCAGGGCTTGGAATTTAGTGGGATTGAATTGCCCGATAGCTTTGGAGAGCTTGTTACAAGTGGAATTTTAATCATCCAGATGCAACGTGTATATAACATGATCTCTCACTTCGTGCAAGCTAGATTTCAAATGGGATCTGACCATGGCCTGAAAGCCCAAGGCGATGGATGGGTTGTAACTGTTGCTTTGATTGAGGGGACTGACCTGGCCTCCATGGAGTCAACAGGTTTGTCAGATCCCTATGTGGTTCTCACCTGTAATGGACAGACAAGATCAAGCTCTGTCAAGCTTCAAACATCCGATCCTCAATGGAATGAGGTATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTTTAGATGTGGAAGTCTTTGATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCCGAGATCAATTTTCTGAAGCAAACATCAACAGAATTGGCAGACATGTGGGTCATGCTTGAAGGAAAGCTCGCTCAGTCTTCTCAATCAAAGTTGCATTTGAGAATTTTCTTAGACAATAACAAAGGTGTTGAAACAATCAAAGAGTATTTGGAGAAGAAGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTCGATCACCTCAAAGGAATTCTACATTCCAGAAGTTGTTTGGGTTGCCTCCGGAGGAATTTCTAATCAAGGATTTCACATGTTCTCTGAAAAGAAAAATGCCTTTGCAGGGTCGGCTATATCTATCGGCAAGGATTCTGGGGTTTTTTGCCAATTTGTTTGGACATAAAACTAATTTTTTCTTCCTCTGGGAAGATATTGAGGACATTCAAGTGCTTCCTCCATCATGGGCATCATTAGGAAGTCCTACATTGGTCATAATTCTTCGAGCAGGTCGAGGCATTGATGCAAGGCATGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAGTCATTTGTTTCATTTAGTGCTGCCTCCAGAATAATAATGGCCTTGTGGAGAACAAGAATGCTAAACCCGTATCAGAAAGAACAGCTCATAGAAGATCATGAGAGTCAAGAAGGCGTTGTAATTCCCGAAGATTCTGAATTAATCCTAGAGGATGAAGCAAAAATGTCCATCATTTACTCTGCAGAACTTCCAATTAACATGAAGTCGGTGATGGGAATTTTTTGTGGAGGAAGCCTGGAGCATAAAATTATGAAGAGAACTGGATGTTTGAACTATGAAACCACAGCTTGGGAACAAGTAAAGCTCGGTGTCCTCGAAAGGCGTGTTTCATACCAAATCAATCTGCATGCTTCAGTTTTTGGTGAAGTCACATGTACACAACAAAAATTGCCAAATGCAAACACCGGAGGCTGGATTGTGAATGAAGTTATGACACTTCATGGTGTCCCATTTGCTGATCATTTTCGGATTCATTTTAGGTACGAAATTGAGAAATCCGTTCTTGGTGACTGTGCTTGTAAGTGTGAAGTGTATAATGGAATCATGTGGCTTAGGAGCTCTAAGTTTCAACAAAGGATCAACCGGAACATAACAGCCAAGTTTAGCGTTAAGTTGAAGGAAACATTTGAACTGGTTCAGAAAGAGATTTTGTTGATGTCTCAGAACTCACATGGCTAA 3006 0.4039 MLRLHVCVLEARDLPAVKDSYYFVKLKLGKSKSKTCMVLTNTNNPVWNEEFVFKVRDQDVLVVSVLNSHHFLLGEVRIPVKKQLTLQPTWFSLQTDKFLNKYCGKILLAISLYGKSHTSLINHKHSPNSNISIEDSKDFKGLKILSKAPYCKMGEGKQLFKVIANRLDRIFNKKEGNSAKPGDSSEISTSLSDFEDIAHANENSSPCSFEGAIAQMESRHDKQEMPENLHGGVLVDQIYAVSPHDLNAILFAPDSQFRKDLAELQGTKNMQEGPWTWKDGDMSRLARVVSFTKAATKLFKAVNATEEQTYIRVAKEEFAVLVSVNTPEVPYGNTFQVELLYKIMPGGELSDEEESSHLVISWGIIFLQSTMMKGMIESGAKQGLKDSFDQFSNLLAQRFKVLDKADLSDKKHLLATLQTEDQWHWWQAATYFWNFTFVSTLLMFLYVLVHILRCGPSHPQGLEFSGIELPDSFGELVTSGILIIQMQRVYNMISHFVQARFQMGSDHGLKAQGDGWVVTVALIEGTDLASMESTGLSDPYVVLTCNGQTRSSSVKLQTSDPQWNEVLEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKQTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLEKKEKEVGKKLNLRSPQRNSTFQKLFGLPPEEFLIKDFTCSLKRKMPLQGRLYLSARILGFFANLFGHKTNFFFLWEDIEDIQVLPPSWASLGSPTLVIILRAGRGIDARHGAKTQDEEGRLRFHFQSFVSFSAASRIIMALWRTRMLNPYQKEQLIEDHESQEGVVIPEDSELILEDEAKMSIIYSAELPINMKSVMGIFCGGSLEHKIMKRTGCLNYETTAWEQVKLGVLERRVSYQINLHASVFGEVTCTQQKLPNANTGGWIVNEVMTLHGVPFADHFRIHFRYEIEKSVLGDCACKCEVYNGIMWLRSSKFQQRINRNITAKFSVKLKETFELVQKEILLMSQNSHG* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5336 1001 ProSiteProfiles VASt domain profile. 830 1000 IPR031968 -
Lja1g5336 1001 CDD C2 4 93 - -
Lja1g5336 1001 Gene3D - 667 794 IPR011993 -
Lja1g5336 1001 SMART C2_3c 517 615 IPR000008 -
Lja1g5336 1001 SMART C2_3c 3 92 IPR000008 -
Lja1g5336 1001 PANTHER BNAA05G37250D PROTEIN 2 998 IPR044511 -
Lja1g5336 1001 Pfam GRAM domain 670 740 IPR004182 -
Lja1g5336 1001 SMART gram2001c 669 735 IPR004182 -
Lja1g5336 1001 Gene3D C2 domain 498 636 IPR035892 -
Lja1g5336 1001 Gene3D C2 domain 2 137 IPR035892 -
Lja1g5336 1001 ProSiteProfiles C2 domain profile. 497 616 IPR000008 -
Lja1g5336 1001 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 998 - -
Lja1g5336 1001 ProSiteProfiles VASt domain profile. 230 403 IPR031968 -
Lja1g5336 1001 CDD C2 518 618 - -
Lja1g5336 1001 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 516 640 IPR035892 -
Lja1g5336 1001 Pfam VAD1 Analog of StAR-related lipid transfer domain 834 973 IPR031968 -
Lja1g5336 1001 Pfam VAD1 Analog of StAR-related lipid transfer domain 234 383 IPR031968 -
Lja1g5336 1001 Pfam C2 domain 3 92 IPR000008 -
Lja1g5336 1001 Pfam C2 domain 517 616 IPR000008 -
Lja1g5336 1001 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 118 IPR035892 -
Lja1g5336 1001 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5336 Lja-Chr1 86327381 86333673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5336 1 189 Lipid Metabolism Gene Families AT1G22610 27.230 5.28e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5336 - - gmx:100811103 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5336 1 86327381 86333673 Lja1g5336 1 86327381 86333673 ECH