Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5309 ATGGGTGGATCAAGTTCAAAAAGGGTGAATTCAAGGCAACGTTCCTCTTCAAGGTCCGGTTCAACTCCCTGGTATCCTCAATATCAATCACCTTACTTGCCACAAAACCAAGATCATGGGGCTCCTCAGGGGCATGAAGGGCATCATCATCCATCTCAAAGCTATGGTAGTGCTGGTGGTTATGCTCCCGAGCAAAGAAAGAGATCAGACAAGAAGTATACAAGGATAGATGATAACTATAAAAGCTTGGACCAGGTAACTGAGGCTCTTGCAAATGCTGGTTTGGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGAAGATGCCTACATCACATCGGGCATGAACAGAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTATCCTCCTTTGATGAAGATAACTTAATTCCCTGTTATGGATTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCAATCCCGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGACACGGTACAGGGAATTGGTTCCACAATTAAAGCTTGCAGGACCAACATCATTTGGTCCAATCATCGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTCTTGGTGATCATAGCAGATGGCCAGGTGACAAGAAGTGTTGACACCGAGCGTGGGCAGTTGAGTTCTCAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCCTGTCAATCATATTAGTTGGAGTTGGGGATGGGCCATGGGATATGATGAAAGAATTTGACGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAACTGAGTTTGCACTTGCTGCATTGATGGAAATACCCTCCCAATATAAGGCAACACTAGAACTTAATATATTGGGTGCACGTAGAGGGAAAGCTATCGACAGGATTCCTCTACCACCACCTCTATATGGTGCCACCGCATCTTACAACTCCCCAAAAACTTCACGTCAAAGCAGTTTTCGTCCCAGTGCACCATCTCACAGGCATGACATTGGCACGAATCCTCCTGCAAGTTTTGCAAGTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCGATCCTAAGAATATGGCCTTTGGTTGTGGGCATCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1329 0.4304 MGGSSSKRVNSRQRSSSRSGSTPWYPQYQSPYLPQNQDHGAPQGHEGHHHPSQSYGSAGGYAPEQRKRSDKKYTRIDDNYKSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCYGFGDASTHDQEVFSFNPDERFCQGFEEVLTRYRELVPQLKLAGPTSFGPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNILGARRGKAIDRIPLPPPLYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSASDNQVCPICLTDPKNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5309 442 CDD RING-HC_RGLG_plant 398 442 IPR045317 GO:0061630|GO:0070534
Lja1g5309 442 PANTHER COPINE FAMILY PROTEIN 1 1 442 - -
Lja1g5309 442 SMART VWA_4 97 300 IPR002035 -
Lja1g5309 442 Pfam Zinc finger, C3HC4 type (RING finger) 396 437 - -
Lja1g5309 442 MobiDBLite consensus disorder prediction 1 37 - -
Lja1g5309 442 ProSiteProfiles Zinc finger RING-type profile. 399 432 IPR001841 -
Lja1g5309 442 CDD vWA_copine_like 76 326 IPR010734 -
Lja1g5309 442 Pfam Copine 122 335 IPR010734 -
Lja1g5309 442 SUPERFAMILY vWA-like 99 281 IPR036465 -
Lja1g5309 442 MobiDBLite consensus disorder prediction 357 374 - -
Lja1g5309 442 Gene3D von Willebrand factor, type A domain 96 314 IPR036465 -
Lja1g5309 442 PANTHER RING-FINGER PROTEIN 1 442 - -
Lja1g5309 442 MobiDBLite consensus disorder prediction 357 393 - -
Lja1g5309 442 SUPERFAMILY RING/U-box 391 437 - -
Lja1g5309 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 442 IPR013083 -
Lja1g5309 442 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5309 Lja-Chr1 82195993 82199631 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5309 K16280 - gmx:100809850 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5309 1 82195993 82199631 Lja1g5309 1 82195993 82199631 ECH