Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5308 ATGACTTCTACTAACTCGGCTCCAAACAAACCTGCTCCTACAAAAGGACCCTCCCAAACCCTCTTGCTACCACACAACACACAGAAACGTGTTCTTCCTCTGCAACAAATCATGATCACCATCCTACTCTTCTTGCTCTGTGCTGGGTTCAGCCATGGCGCCAAAAATGAAGGATCATTGGAAGGGAGAAAAGGGCAGTGGCAAATGCTCCTCAATAACACCGGCGTGGTTGGCATGCACACGGCTTTAACCTCCAAAAACACAATCATAATGTTTGATCAAACCGAAGCTGGCCCATCTGGCTACCCACTTCACAAACGCTTCAATGGAAGCAGGTGCAACACCAGAAGCCACAACGATGTGGTGGACTCAACATGCTATGCTCACTCTGTAGAGTATGACATAAGTGCCAACAGAGTGAGGCCTTTGAGGCTTGACTCTGATCCTTGGTGTTCCTCTGGCTCTTTCCTCAGCAATGGAACACTTCTACAAACTGGTGGGTATGGCAGAGGTGCCAAAAGGATCAGATTCTACCGCCCCTGTGGGAATCACCAATGCCACTGGATCCAATCAAGGAAATCTCTATCTGATGAAAGATGGTATGCTTCTAGCCAAATACTCCCAGACCATGACAGGGTAGTTATTGTTGGTGGAAGAAGGACCTTCACATATGAATTCATACCAAAAATTAGTCCTACTGAAAAATCCTTTGATCTTCCCTTTTTGCACAAAACCAATGAAAGAAATGCAAAAGGGAACAACCTCTACCCTTTCCTTCACCTCTCATCAGATGGAAACCTCTTCATTTTCGCAAACCTCATTAAGACATTTCCTCGTATACCTGGTGACGGGTCGCGAAACTACCCGAGCTCTGGCTCATCAGTGATGCTTCCACTGGATCACAGCGACAATTTCCACAAAGTGGAGGTTATGGTGTGTGGAGGTTCAGCAACCGGAGCACTCAGAGCTGCTAGTAACCGAAAATTCCTCGAGGGATTGAGATCTTGTGGGAGAATGGTGATAACAGGGAATGACAACAAGTGGGAAATGGAGTACATGCCGGAACCGCGTCTCCTACACGACATGCTGATTCTCCCTAATGGGAACATTCTGATCATCAATGGAGCAAAACATGGTTGTGCTGGGTATGACAATGCTAGAAACGCTTCTCTTGAGCCTTATCTATATAGCCCAAAGAAACGATTAGGAAAAAGGTTCAGGGTTCTGAAATCGACCAAAATCGCCAGAATGTATCACTCATCTGCAACTCTTCTTCCTGATGGGAGAGTCTTGGTTGCAGGAGGAAACCCTCACGGAAGGTACAGTTTTCACAATGTGGCGTACCCAACGGAACTGAGACTTCAAGCATTTGTTCCGCACTATATGCATCGGAGGTACCATAGCTGGAGGCCAAGCAATTTGACAGTAAAATCTGGCGGTGGTGGTGAAAGGGGTGTGATTGGGTATGGGGCTGAATTTAGGGTTCGGTTTTTGGTGGGGACAAGGCCGAGCAATGAGGTAGCGTTTAGTGTCTACGCGCCGCCGTTTACTACTCACTCGGTGGCGATGAATCAGAGGATGTTGAAGCTGAGGTGCAGGAGCATGGTGAGGAGTAGTGGAGGATGGGTGGATGCTGTTTTGGAAGCGCCACCGTCACCGCGTGTTGCGCCGTCTGGTTATTACTTGCTCACGGTTGTGAATGGAGGAATTCCAAGCGTGTCTCAATGGATTCAGTTTGGGCACGCCTAG 1749 0.4791 MTSTNSAPNKPAPTKGPSQTLLLPHNTQKRVLPLQQIMITILLFLLCAGFSHGAKNEGSLEGRKGQWQMLLNNTGVVGMHTALTSKNTIIMFDQTEAGPSGYPLHKRFNGSRCNTRSHNDVVDSTCYAHSVEYDISANRVRPLRLDSDPWCSSGSFLSNGTLLQTGGYGRGAKRIRFYRPCGNHQCHWIQSRKSLSDERWYASSQILPDHDRVVIVGGRRTFTYEFIPKISPTEKSFDLPFLHKTNERNAKGNNLYPFLHLSSDGNLFIFANLIKTFPRIPGDGSRNYPSSGSSVMLPLDHSDNFHKVEVMVCGGSATGALRAASNRKFLEGLRSCGRMVITGNDNKWEMEYMPEPRLLHDMLILPNGNILIINGAKHGCAGYDNARNASLEPYLYSPKKRLGKRFRVLKSTKIARMYHSSATLLPDGRVLVAGGNPHGRYSFHNVAYPTELRLQAFVPHYMHRRYHSWRPSNLTVKSGGGGERGVIGYGAEFRVRFLVGTRPSNEVAFSVYAPPFTTHSVAMNQRMLKLRCRSMVRSSGGWVDAVLEAPPSPRVAPSGYYLLTVVNGGIPSVSQWIQFGHA* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5308 582 PANTHER SECRETED PROTEIN-RELATED 37 581 - -
Lja1g5308 582 Pfam Glyoxal oxidase N-terminus 79 315 IPR009880 -
Lja1g5308 582 CDD E_set_GO_C 489 578 IPR015202 -
Lja1g5308 582 Gene3D - 61 468 IPR037293 -
Lja1g5308 582 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g5308 582 Gene3D Immunoglobulins 480 581 IPR013783 -
Lja1g5308 582 SUPERFAMILY E set domains 467 579 IPR014756 -
Lja1g5308 582 Pfam Galactose oxidase-like, Early set domain 487 578 IPR015202 -
Lja1g5308 582 PANTHER ALDEHYDE OXIDASE GLOX-LIKE 37 581 - -
Lja1g5308 582 SUPERFAMILY Galactose oxidase, central domain 130 462 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5308 Lja-Chr1 82192690 82194474 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5308 - - lja:Lj0g3v0135699.1 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5308 1 82192690 82194474 Lja1g5308 1 82192690 82194474 ECH