Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5305 ATGACGATCACGGCAGCTCCGACGGTGAAGGAAGAGTGCCTCATGGTGAGGGGAAAGGTTGTTTTGACCCAAGTCCCCGACAACATCGTGGTTTCTCCGGTTGGTAGTGGTACAGCCACAGGGTGTGCTTTCTTGGGCGCAACTTCCACCGTTCCAAATTCCCGTCATGTCTTCACTCTTGGCTATCTCAGGGGATATAAGCTGTTATCTTTGTTCAGATTCAAAATCTGGTGGATGATCCCGCGTGTAGGGAGATCTGGTAGTGATGTTCCAGTAGAAACTCAATTGCTGCTGCTGGAAGCAAGAGAAGAGGCTGCGCTTCATGATGAATTTTCTTCTGAATCTGAAGAGTCGACGGCTGATAACACTTCCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTGCAGGGAACCCCATCAAATAAGCTCCAATTCTGTGTTGAAAGTGGAGATGCCCAAGTCCAAACTTCCCAATCAAATGAAGCAATATTTGTACATTCAGGGGACAATCCATTTGAATTGATCCGGGATTCTATAAAGATATTGGAGAAACACAAAGGAACTTTCTGCCATATTGAAAACAAGAAGGTCCCTTCACATCTTGAATGGTTTGGATGGTGTACTTGGGATGCTTTTTATACTGAAGTGAATCCACAGGGAATAAGAGAGGGCATTCAAAGTCTCTCAAATGGAGGTTGTTCACCAAAGTTTGTCATCATTGATGATGGATGGCAAGAGACCCTCAATGAGTTTCACAAAGAAGGTGAACCAATGATTGAAGGAACCCAGTTTGCAACAAGACTGATTGACATTAAAGAAAACAAGAAGTTCAGCAATCCAAGCTCTGACGATTGTTGCAACAATCTTCATGATTTTCTGGACTGTATCAAACAGAATTTCAGTGTAAGATACATTTACATGTGGCATGCTTTAGCTGGTTATTGGGGAGGAGCACTCCCTTCATCAGATGCAATGAAGAAATATAATCCAAGACTTGCACATCCAATTCAGTCACCAGGTGCCAAAGGGAACCTCAGAGATGTAGCTATGGACAGCTTGGAAAAATATGGAGTGGGAATCATAGACCCACAAAAGATATACAACTTTTACAATGATTATCACAGTTATCTTGCAAGCTGTGGTGTGGATGGAGTTAAAGTAGATGTCCAAAATTTGATCGAAACGTTGGGTTCTGGGTACGGTGGACGCGTTTCATTAACCAAACAGTACCAAGAAGCACTGGAGGAATCAGTGGAAAGGAACTTTAAGGACAATAATCTCATTTGCTGCATGTCTCATAACTCTGATTCAATTTACAGTTCAAAGAAGAGTGCAGTAGCAAGAGCATCTGAGGATTTCATGCCAAGAGAACCTACATTTCAAACCTTACACATTGCCTCAGTAGCTTTTAACAGTCTTCTTCTGGGGGAGATATTTGCGCCAGATTGGGACATGTTCCATAGCAAGCACGAGACAGCCGAGTTCCATGCTGCAGCAAGAGCAATTGGTGGTTGTGCAGTATATGTAAGTGATAAGCCTGGTAATCATGATTTTAAAATCCTGAAGAAGCTAGTACTGCCTGATGGATCAGTCTTGAGAGCAAGATATGCAGGCCGTCCTACTCGAGATTGTTTATTTGAAGATCCTGTAATGGATGGTAAAAGTCTGCTGAAAATTTGGAACATGAATATGCTTACCGGGGTGGTAGGCGTCTTTAACTGCCAAGGAGCAGGAACTTGGCCATTGAAATCATCAGAAACCGTACCAACACACTTATCCATTTCAGGGAAAGTGAGACCTCTGGATGTTGAATTTCTTGAAGAGGTTGCTGGTAAAAATTGGAATGGAGATTGCATAGTTTATGCTTTCAATGCAGGTTTGCTTTCCAAGCTGCCAAGCACAGGGAAACTAGAAGTGTACTTGGAGACTCTCCAATGTGAAATATATACAGTATCTCCTATCAGGGTGTTTGGTCATGAAGTTCAATTTGCTCCAATAGGATTGCTTGACATGTACAATTCAGGAGGAGCAGTAGAAGCTCTAGACTGCTGCACCAGGGATGTTGCGGAATGCAGAATAAAAACCAAATGCAGAGGATGTGGCCGTTTTGGAGCCTACTCCAATGTTAGACCAAAACGTTGTATGGTGGACATGAAGGATGAGGAGTTCTCCTACAACTCTGAAGATGGATTATTGACTATTAAAGTTGAGGGTGAAGGCAATTCAAGGGAAATAGAATTGGTATACTGA 2265 0.4274 MTITAAPTVKEECLMVRGKVVLTQVPDNIVVSPVGSGTATGCAFLGATSTVPNSRHVFTLGYLRGYKLLSLFRFKIWWMIPRVGRSGSDVPVETQLLLLEAREEAALHDEFSSESEESTADNTSYILFLPVLDGQFRATLQGTPSNKLQFCVESGDAQVQTSQSNEAIFVHSGDNPFELIRDSIKILEKHKGTFCHIENKKVPSHLEWFGWCTWDAFYTEVNPQGIREGIQSLSNGGCSPKFVIIDDGWQETLNEFHKEGEPMIEGTQFATRLIDIKENKKFSNPSSDDCCNNLHDFLDCIKQNFSVRYIYMWHALAGYWGGALPSSDAMKKYNPRLAHPIQSPGAKGNLRDVAMDSLEKYGVGIIDPQKIYNFYNDYHSYLASCGVDGVKVDVQNLIETLGSGYGGRVSLTKQYQEALEESVERNFKDNNLICCMSHNSDSIYSSKKSAVARASEDFMPREPTFQTLHIASVAFNSLLLGEIFAPDWDMFHSKHETAEFHAAARAIGGCAVYVSDKPGNHDFKILKKLVLPDGSVLRARYAGRPTRDCLFEDPVMDGKSLLKIWNMNMLTGVVGVFNCQGAGTWPLKSSETVPTHLSISGKVRPLDVEFLEEVAGKNWNGDCIVYAFNAGLLSKLPSTGKLEVYLETLQCEIYTVSPIRVFGHEVQFAPIGLLDMYNSGGAVEALDCCTRDVAECRIKTKCRGCGRFGAYSNVRPKRCMVDMKDEEFSYNSEDGLLTIKVEGEGNSREIELVY* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5305 754 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 2-RELATED 1 754 - -
Lja1g5305 754 Gene3D Aldolase class I 206 530 IPR013785 -
Lja1g5305 754 PANTHER - 1 754 IPR008811 -
Lja1g5305 754 Pfam Raffinose synthase or seed imbibition protein Sip1 9 741 IPR008811 -
Lja1g5305 754 SUPERFAMILY (Trans)glycosidases 208 530 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5305 Lja-Chr1 82074144 82079770 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5305 1 741 Glycoside Hydrolase AT1G55740 48.541 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5305 - - gmx:100816978 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5305 1 82074144 82079770 Lja1g5305 1 82074144 82079770 ECH