Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5299 ATGGCTAGCAATCCTCACTCGCATGCCCCTAGGAAGATGCAACAGAGAAAGGAACGACGCATGTTCTCCGCTTCTGATGACAGTGCCATGATGAAACAAGTGCAGGGAACTCATGCCCCTGATGGTCGTGAAATTGATGTTAAACACATTATTCAAATAGTGGATGAAATCTTGATTCAAGTCATTGGTCGCGGTGTTGAGGGTCATGATGTAAAGAGAGAGCAAGAAACATTGGAGATTTCTGCTGCTTTGGCTGAATTTGACATGCTAGATTCTCTGGCTTTTGTCATAAACAAAATTTCTTGCGAGCTATCATGCAAATGGTCTGGTGGTGGAGATGCACATGCATCAACCATGGTGTTGCTGACTTACATGTCTAACTACGCATGGCATGCAAAAGTGGTGTTAACCTTAGCAGCCTTTGCTGTTATCTCTGGGGAGTTTTGGCTTGTTGCCAATATGAGTGCTTTAAATACACTTGCTAAGTCTGTGGCCCTCCTCAAGCAACTCCCTGACATGGTAGAGAATTCTGCATCTCTGAGACCCCAGTTCGATGCGCTCAATAAGCTCGTGAAGGCAGCGCTGGATGTAACCTATTGCATCATTGAGTTCAAGGAGCTACCATCTGAGTACATTTCAGAGGACATGCCTCCTATGTCTGTTGCAAGTGCTCATATTCCTATTGCTGCCTATTGGGTCATTAGGAGTATTGTGGCTTGTGCCTCACAAATTGCACTTCTCATAGGCAGTAGAAATGAGGCCATTTCGTCAGCCACAGAGGCATGGGAATTGTCTAGTCTGGCTCACAAAGTCACAAGTATACATGAGCACCTCAAGAATCAATTGGAACTTTGCTACCAATATATAGATGACAAGAGGCATGTAGAGGCCTTTCATAATCTGATTCGCCTTTTCGAGACAAGCCATGTAGACAACATGAAAATCCTCAGAGCACTGATATATCCAAAGGATGATATTCCTCCACTTATAGATGGAACTACAAAATCAAAGGTTAGTCTTGAGGTACTAAGGAGGAAGCATGTGTTGCTGCTGATATCAGATCTTGATCTTGCACAAGAAGAGATCATGGTACTTGACAATTTGTACAAAGATGCGCGATCGAGGGGTGAGATGCACTACGAGATGGTGTGGATCCCAGTTGTGGACAAAGCAACCTGGAATGATGTTAACAAGCAGAAATTTGAGTATTTGCAGTCACTGATGGCCTGGCACAGTGTTCGTGATCCTTTCATCATCGAACCATCAGTGATAAGGTACAACAAAGAAGTGTGGAATTTCACAAAGAGAGCTATTGTGGTGGCCCTTGATCCACAAGGCAGATTATCCTCCCCAAATGCTCTCCACATGATATGGATCTGGGGCAATTTGGCCTTCCCATTTACACGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGATTTGGAGCCTTGAGCTACTTGTTGATGGCATTGATCCTATGGTTTTGGAATGGATGGCAGAAGAAAAAATTGTGTGCCTATATGGAGGTGAAGATCTTGAGTGGATTGAAACATTCACAGCCACTGCAATGAATGTTGCAAGAGCTGGCAAATTCGATCTGGAGATGGTTTATGTAGGAAAAAGCAATGCTAAAGAAAGGATGCAGAGAATGATCAGCACCTTTGCCAACAGAAAGTTCAGTTACTTTTGGCCTAATGTCACATCCATTTGGTTCTTCTGGGCAAGGTTGGAGAGCATGTTGTATTCCAAGTTGCAGCATGGAAGCACAGTTGAGAATGATCCAATCATGAGCGAGGTCATGACCGTGCTTAGCTTCGATGGAAGCGACCGAGGGTGGGCGATTTTCTGTAGAGGGGCATCTGAAATGGCTAGAGCTAAAGGTGACACTGCTCTAACAAGTTTGAGAGATTTTGATAAGTGGAAGCATAAGATTGAGCAAGATGGTTTGGTGCCTGCACTGAATGATTATCTGCACCAAATTCATACACCAGATCATTGCAATCGTCTCATTCTTCCTGGGAGCACTGGGGGGATACCAGAAAAGGTAGTTTGTGCTGAGTGTGGTCGTCAAATGGAGAAGTACTTCATGTACCGCTGCTGTGTGGAGTGA 2109 0.4429 MASNPHSHAPRKMQQRKERRMFSASDDSAMMKQVQGTHAPDGREIDVKHIIQIVDEILIQVIGRGVEGHDVKREQETLEISAALAEFDMLDSLAFVINKISCELSCKWSGGGDAHASTMVLLTYMSNYAWHAKVVLTLAAFAVISGEFWLVANMSALNTLAKSVALLKQLPDMVENSASLRPQFDALNKLVKAALDVTYCIIEFKELPSEYISEDMPPMSVASAHIPIAAYWVIRSIVACASQIALLIGSRNEAISSATEAWELSSLAHKVTSIHEHLKNQLELCYQYIDDKRHVEAFHNLIRLFETSHVDNMKILRALIYPKDDIPPLIDGTTKSKVSLEVLRRKHVLLLISDLDLAQEEIMVLDNLYKDARSRGEMHYEMVWIPVVDKATWNDVNKQKFEYLQSLMAWHSVRDPFIIEPSVIRYNKEVWNFTKRAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQEIWSLELLVDGIDPMVLEWMAEEKIVCLYGGEDLEWIETFTATAMNVARAGKFDLEMVYVGKSNAKERMQRMISTFANRKFSYFWPNVTSIWFFWARLESMLYSKLQHGSTVENDPIMSEVMTVLSFDGSDRGWAIFCRGASEMARAKGDTALTSLRDFDKWKHKIEQDGLVPALNDYLHQIHTPDHCNRLILPGSTGGIPEKVVCAECGRQMEKYFMYRCCVE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5299 702 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 701 - -
Lja1g5299 702 Pfam Sieve element occlusion N-terminus 25 309 IPR027942 -
Lja1g5299 702 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 9 701 IPR039299 GO:0010088
Lja1g5299 702 Coils Coil 355 375 - -
Lja1g5299 702 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g5299 702 Pfam Sieve element occlusion C-terminus 471 700 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5299 Lja-Chr1 81674666 81679577 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5299 - - gmx:100811452 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5299 1 81674666 81679577 Lja1g5299 1 81674666 81679577 ECH