Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5295 ATGGAGAATCCTTGCAAATCAAAGGAAGAAATTGCGAATGATGCTATCAAGCAGGCTTTGAGGGCGTTGCGGAAGCGCCATTTGAACGAAGAAGGAGCTCATGCGCTTGCATTCGCTGCTCTTTCTGGACCTATCGCTTCCCAGGGCTCTGAATGGAAAGAGAAAGCAGAGAGTCTGGAAGTGGAACTTCAACAATGCTACAAAGCTCAATCTCGAGTATCTGAGCAGCTAGTTGTCGAAATAGCTGAATCCAGAGCGTTGAAATCTTTGATTCAAGAGAAAGAAACTGCAATGGTTGATCTACAAAAGGAGTTGGCTGAAGTGAGGGATGATTGCTCTCATTTAAAAATGGATTTAGAAGAAAAAACGAAAGCTCTTGAATTGATTATTAGCGAGAACGCGGAACTTAAAGCACAATTGGAGCAGATTACTATTAGAGCCAAGAATGCTGAAGCTGAAAATAAGACATTGGTGGATCGCTTCATGTTAGAAAAAATGAAGGATGCTGAGCGCTTAAATGAGGTTAACCAATTGTACGATGACATGATCAAGCGGCTAAAGGCCAGTGGTTTAGAAAAACTTGCAAGACAGCAGGTAGACGGCATAGTTCGCCAAAGTGAAGAAGGTGCTGACTTCTTTTCTGAGACAACCGTCCCTTCTACATGCAAATACAGACTCCAGGCACATGAAGGTGGTTGTGCTTCCTTATTGTTTGAGTCAAATTCTAGTAAATTGATTACCGGGGGACAGGATCGATTACTTAAAATATGGGACACAAATACAGGATCCTTAAGTTCCACTCTACATGGCTGCTTAGGTTCTGTATTAGATCTCACAATCACCCATGATAATCAATCTGTTATTGCTGCAAGCAGCTCAAACAATTTATATGCATGGGATCTCAACTCAGGTCGAGTCCGTCACACCCTTACCGGCCACAAAGATAAAGTCTGTGCTGTCGATGTCAGCAAGATTTCAAGCCGGCAAGTTGTCAGCGCAGCTTATGATCGGACTATAAAAGTTTGGGACTTGCTGAAAGGCTATTGCATTAACACAATCATCTTTCACAGCAACTGCAATGCGCTTTGCTTCAGCATGGATGGACAGACCATATTTTCTGGGCATGTTGATGGAAATCTTCGATTGTGGGATATTAAAACTGGAAAACTACTCAGCCAGGTTGGGGCACACTCACTTGCTATTACATCAGTTTCTCTTTCTCGCAATGGAAATGTTGTATTGACTAGTGGAAGGGACAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTAGTGGCACACTAAGAGGCACTGGAAATAGAGTGGCTTCTAATTGGAGTCGCTCTTGTATTAGTCCTGATGATAAACATGTTTCTTCTGGATCTTCTGATGGATCTGTCTATGTTTGGTCAACATCTACAGTTGATATAGTTAGCACTCTGAAGGAGCATGCTTCTTCTGTCCTGTGTTGTGCTTGGAGTGGCCTTGGAAAACCTCTAGCTTCAGCTGACAAGAATGGGGTTGTTTGTATCTGGACCTAA 1545 0.4265 MENPCKSKEEIANDAIKQALRALRKRHLNEEGAHALAFAALSGPIASQGSEWKEKAESLEVELQQCYKAQSRVSEQLVVEIAESRALKSLIQEKETAMVDLQKELAEVRDDCSHLKMDLEEKTKALELIISENAELKAQLEQITIRAKNAEAENKTLVDRFMLEKMKDAERLNEVNQLYDDMIKRLKASGLEKLARQQVDGIVRQSEEGADFFSETTVPSTCKYRLQAHEGGCASLLFESNSSKLITGGQDRLLKIWDTNTGSLSSTLHGCLGSVLDLTITHDNQSVIAASSSNNLYAWDLNSGRVRHTLTGHKDKVCAVDVSKISSRQVVSAAYDRTIKVWDLLKGYCINTIIFHSNCNALCFSMDGQTIFSGHVDGNLRLWDIKTGKLLSQVGAHSLAITSVSLSRNGNVVLTSGRDNLHNLFDVRSLEVSGTLRGTGNRVASNWSRSCISPDDKHVSSGSSDGSVYVWSTSTVDIVSTLKEHASSVLCCAWSGLGKPLASADKNGVVCIWT* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5295 514 Coils Coil 84 160 - -
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Lja1g5295 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Lja1g5295 514 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515
Lja1g5295 514 Pfam WD domain, G-beta repeat 479 513 IPR001680 GO:0005515
Lja1g5295 514 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Lja1g5295 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Lja1g5295 514 CDD WD40 222 513 - -
Lja1g5295 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 9 514 - -
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Lja1g5295 514 SUPERFAMILY WD40 repeat-like 218 513 IPR036322 GO:0005515
Lja1g5295 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Lja1g5295 514 Gene3D - 100 357 IPR015943 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Lja1g5295 514 Gene3D - 358 514 IPR015943 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Lja1g5295 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Lja1g5295 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Lja1g5295 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Lja1g5295 514 Pfam Autophagy protein 16 (ATG16) 48 173 IPR013923 -
Lja1g5295 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Lja1g5295 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Lja1g5295 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Lja1g5295 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Lja1g5295 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Lja1g5295 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 514 IPR045160 GO:0000045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5295 Lja-Chr1 81140654 81144008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5295 224 494 Miscellaneous Gene Families AT5G08390 27.526 1.11e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5295 K17890 - gmx:100778336 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5295 1 81140654 81144008 Lja1g5295 1 81140654 81144008 ECH