Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5293 ATGGCTACGAGTGATTTGGACACCAACCCTGCTCTTAAACTGGATTCGGATACTCCAATAAACCCGGATCACGAGTTTGCAGAGTTCGGAGCGGGTTGTTTCTGGGGCGCGGAGCTCGCATTTCAACGAATTGCAGGTGTGGTGAAGACTGAGGTTGGATATTCCCAGGGTCACCATGATAACCCGGATTACAAATTGGTTTGCACCGGAACCACCAACCATGCGGAGTTGGTTCGGATCCAGTTCGACCCGAAACTCTGCCCCTACACCAATCTCCTCAATGTCTTTTGGGCTCGAATTGACCCAACCGCTCTCAATCGCCAGGGAGGTGATGTGGGTACACAGTACAGATCAGGAATATACTACTACAATGAAACCCAGGCTCGTTTAGCTCAGGAGTCAAAAGAAGCTAAGCAATTGGAATTGAAGGAGAAGGTTGTGACAGAAATTCTTCCAGCAAAGAGGTTCTACAGAGCAGAGGAATACCATCAGCAATATCTTGAGAAGGGTGGAGGTAAAGGCCTCAAACAATCTGCTGAAAAGGGTTGCACTGATCCCATTAGGTGTTATGGTTAA 576 0.4809 MATSDLDTNPALKLDSDTPINPDHEFAEFGAGCFWGAELAFQRIAGVVKTEVGYSQGHHDNPDYKLVCTGTTNHAELVRIQFDPKLCPYTNLLNVFWARIDPTALNRQGGDVGTQYRSGIYYYNETQARLAQESKEAKQLELKEKVVTEILPAKRFYRAEEYHQQYLEKGGGKGLKQSAEKGCTDPIRCYG* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5293 191 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 6 191 - -
Lja1g5293 191 TIGRFAM msrA: peptide-methionine (S)-S-oxide reductase 26 169 IPR002569 GO:0008113
Lja1g5293 191 Pfam Peptide methionine sulfoxide reductase 28 170 IPR002569 GO:0008113
Lja1g5293 191 PANTHER PEPTIDE METHIONINE SULFOXIDE REDUCTASE FAMILY PROTEIN 6 191 - -
Lja1g5293 191 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 24 181 IPR002569 GO:0008113
Lja1g5293 191 SUPERFAMILY Peptide methionine sulfoxide reductase 18 172 IPR036509 GO:0008113
Lja1g5293 191 Gene3D Peptide methionine sulphoxide reductase MsrA 13 191 IPR036509 GO:0008113
Lja1g5293 191 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5293 Lja-Chr1 81122189 81123391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5293 K07304 - qsu:112013880 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5293 1 81122189 81123391 Lja1g5293 1 81122189 81123391 ECH