Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5289 ATGGCGGATAAGCTGGGAGGAGCAGCAGCTGAACAGAGCTTGAACTCGAAGAGTTCACACCAAACGACTTCGAAGCTCGTCGTTTTGGCTGACCTCAACGTCAATCCTCCCGAAGCCGAAGCCGACGACGACGATTCTTCCCTTCTCCCTCCTCCCCAAATCATTACCAGGTTGACAAATGACGAAAACAGTCAAGATAAGAGTCTGTTGTCCAAAGACACTGATAGTACTGAAGGCGAAGGTAAAAAGTCGCACAAACTGGGGAAATGCCGCTCCAGACCTAGCAAGACAGATTCTCTTGATTGTGGGGGTGATGCAGATGTTGATCAACATGTACAAGGAGCTCCTTCATCCCGGGAGGAAAAAGTTAGCAGCATGAAGACTGGCTTGATTCATGTTGCGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGCACCAAAGATTAAACCAGCCTCAAAAGGCTATACTGGTTTATGAGAAGGCAGAAGAGATCTTACTCAGGCCTGAGACTGAGATTGAGAGGCCAGATTTGCTTTCTTTAGTTCAGATTCACCATGCCCAGTGCTTGATACTCGAAAGCTCATCAGAAAACAGTTCAGATAAAGAACTCGAACCTCACGAACTTAAGGAAATTCTTTCTAAACTTAAAGAGTCAGTGCAGTTTGATATCAGACAGGCAGCTGTATGGAATACACTAGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCGTTGTTAGCCATTGCTCCAGAGAACTACGATTGTCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCCGCAAAATGTTTTCAGGAGTTGATTCTAAAAGACCAAAACCATCCCGTAGCTTTGGTCAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTAGTAGCAGGTGCTGGTGCAAGTGCGTCTGAAGGTGCTTTAGCAGATCAGGTGATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGTCAAATCAGCCCATATCTGGGGAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGTTTAGAGAAGGCAGCAAAACTTGAACCTAATTGCATGTCTACCCGATATGCTGTTGCTACCCATCGAATGAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAACTGCTTTCATTCGGTGGAAATGAGATGGCTTCTATAATAAGAGATGGTGACTCATCTTTGGTTGAGCTTCCAACAGCCTGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATATCATCAGCATACGAAAGTGAACAGCATGTGCTGACAGAAATGGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCCGTAGCAGAAGATCCAGATGATCCTGTGCGGTGGCACCAACTTGGCGTTCATAGTCTTTGTACCCAGCAATTCAAAACATCACAAAAATACCTTAAAGCTGCTGTTGCCTGTGACAGAGGTTGTAGCTATACATGGTCTAACCTCGGTGTATCACTTCAACTATCGGAAGAGCCATCACAAGCTGAAAAGGCATATAAGCAAGCTTTGTTATTGGCAACAAAACAACAAGCACATGCTATTCTGTCCAATTTGGGAATATTCTATCGCCATGAGAAGAAATATCAACGTGCGAAGGCTATGTTCACAAAGTCACTTGAACTGCAGCCTGGGTACGCTCCTGCATTCAACAATCTAGGTCTTGTGTTTGTTGCTGAGGGTCTGTTGGAAGAGGCCAAGTATTGTTTTGAAAAAGCTCTGCAATCTGATCCATTGCTCGATGCAGCTAAGTCTAACTTGGTTAAGGTGGTTACGATGTCAAAGATATGTAAAGGCCTTCTTAAAGAATGA 1935 0.4388 MADKLGGAAAEQSLNSKSSHQTTSKLVVLADLNVNPPEAEADDDDSSLLPPPQIITRLTNDENSQDKSLLSKDTDSTEGEGKKSHKLGKCRSRPSKTDSLDCGGDADVDQHVQGAPSSREEKVSSMKTGLIHVARKMPKNAHAHFILGLMHQRLNQPQKAILVYEKAEEILLRPETEIERPDLLSLVQIHHAQCLILESSSENSSDKELEPHELKEILSKLKESVQFDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPVALVNYAALLLCKYASVVAGAGASASEGALADQVMAANVAKECLLAAIKADVKSAHIWGNLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVATHRMKEAERSQDPSELLSFGGNEMASIIRDGDSSLVELPTAWAGLAMVHKAQHEISSAYESEQHVLTEMEERAVCSLKQAVAEDPDDPVRWHQLGVHSLCTQQFKTSQKYLKAAVACDRGCSYTWSNLGVSLQLSEEPSQAEKAYKQALLLATKQQAHAILSNLGIFYRHEKKYQRAKAMFTKSLELQPGYAPAFNNLGLVFVAEGLLEEAKYCFEKALQSDPLLDAAKSNLVKVVTMSKICKGLLKE* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5289 644 Pfam Tetratricopeptide repeat 242 301 - -
Lja1g5289 644 ProSiteProfiles TPR repeat profile. 554 587 IPR019734 GO:0005515
Lja1g5289 644 SUPERFAMILY TPR-like 208 629 IPR011990 GO:0005515
Lja1g5289 644 MobiDBLite consensus disorder prediction 11 29 - -
Lja1g5289 644 Pfam Tetratricopeptide repeat 141 170 IPR019734 GO:0005515
Lja1g5289 644 Pfam Tetratricopeptide repeat 355 388 IPR019734 GO:0005515
Lja1g5289 644 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 11 641 - -
Lja1g5289 644 Gene3D Tetratricopeptide repeat domain 130 329 IPR011990 GO:0005515
Lja1g5289 644 MobiDBLite consensus disorder prediction 1 124 - -
Lja1g5289 644 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 11 641 - -
Lja1g5289 644 Gene3D Tetratricopeptide repeat domain 466 553 IPR011990 GO:0005515
Lja1g5289 644 Gene3D Tetratricopeptide repeat domain 330 423 IPR011990 GO:0005515
Lja1g5289 644 SMART tpr_5 518 551 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 435 468 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 266 299 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 588 621 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 141 174 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 554 587 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 232 265 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 355 388 IPR019734 GO:0005515
Lja1g5289 644 SMART tpr_5 484 517 IPR019734 GO:0005515
Lja1g5289 644 ProSiteProfiles TPR repeat profile. 588 621 IPR019734 GO:0005515
Lja1g5289 644 Gene3D Tetratricopeptide repeat domain 554 632 IPR011990 GO:0005515
Lja1g5289 644 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Lja1g5289 644 MobiDBLite consensus disorder prediction 66 105 - -
Lja1g5289 644 Pfam Tetratricopeptide repeat 554 616 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5289 434 620 Glycosyltransferase AT3G04240 24.468 6.10e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5289 - - gmx:100820184 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5289 1 80927574 80933193 Lja1g5289 1 80927574 80933193 ECH