Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5288 ATGGCAATGGCAGCAGCAAGTAGCATCATCTCCGTTTCCTCTGCTTCACTCTTGATCACAACACCCCAACCCAAAACGCAAACCATCCTCCTAAAACACACACATGAACATCATCATGTTCCAACATCCTCTTTGACAGGCACATCAACACTTGCTTCTCTCAAGATATCATCATCACCAGCAACAACAACATCAATGAGAACTGCCACAAGGCGCAGGTTGAGTTGCTCAGCCTCTGCTTCACCTTCCACGCTTCCCTCGGCTCTTCTTTTTGACTGCGATGGTGTCCTTGTTGACACTGAGAAAGATGGCCACCGTATCTCTTTCAATCAAACATTCCAAGAGAGAGAACTAGGTGTTACCTGGGACGTGGACTTGTATGGGGAGTTACTCAAAATTGGAGGTGGGAAAGAAAGGATGACAGCCTACTTTAACAAGACGGGTTGGCCTGCGAATGCCCCATCAGGTGAACAAGAAAGGAAAGAATTTGTAGCTTCACTTCACAAGCAAAAGACAGAACTATTCATGGCCCTTATTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTTGATCAGGCTTTAACTCAAGGAGTCAATGTTGCTGTTTGCAGCACTTCCAATGAGAAGGCGGTATCTGCAATAGTATCATTCTTGCTGGGACCTGAGCGAGCAGAAAAAATCCAGATATTTGCAGGAGATGTGGTTCACCGCAAAAAGCCTGATCCAGCCATCTATATACTAGCAGCCAACACTCTGGGTGTTGAACCTTCAAGATGTGTTGTGGTGGAGGACAGTGCCATAGGCCTAGCAGCTGCTAAAGCAGCTGGTATGAAGTGTATCATAACAAAGAGCGGCTATACAGCAGATGAAGACTTCTTAAATGCAGATGCGGTGTTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTCTGTGGTAGCCTTCTTGAGAAGCAATACGTCAGCTAG 990 0.4606 MAMAAASSIISVSSASLLITTPQPKTQTILLKHTHEHHHVPTSSLTGTSTLASLKISSSPATTTSMRTATRRRLSCSASASPSTLPSALLFDCDGVLVDTEKDGHRISFNQTFQERELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPANAPSGEQERKEFVASLHKQKTELFMALIEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSFLLGPERAEKIQIFAGDVVHRKKPDPAIYILAANTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIITKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5288 329 CDD HAD_CbbY-like 88 288 - -
Lja1g5288 329 Pfam Haloacid dehalogenase-like hydrolase 89 285 IPR041492 -
Lja1g5288 329 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 168 285 IPR006439 -
Lja1g5288 329 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 84 312 - -
Lja1g5288 329 PANTHER CBBY-LIKE PROTEIN 57 328 - -
Lja1g5288 329 Gene3D Putative phosphatase; domain 2 100 184 IPR023198 -
Lja1g5288 329 SFLD phosphoglycolate phosphatase 84 312 - -
Lja1g5288 329 SUPERFAMILY HAD-like 87 305 IPR036412 -
Lja1g5288 329 Gene3D - 88 304 IPR023214 -
Lja1g5288 329 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 57 328 IPR044999 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5288 Lja-Chr1 80915062 80918916 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5288 - - gmx:100786021 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5288 1 80915062 80918916 Lja1g5288 1 80915062 80918916 ECH