Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5263 ATGCTGAAATCAACGTTCTCCCCAATTTTCTGGGTGCTTGCTCCTAAACCCAAATATCCAAAACTATCACCCCATGCAATCACCAACACTTTTTCAAACCGCACACCAGTTGTTCGACACAATTCCTCTATGAAACACCCCATTATCACAGCGCCACTTCCTTCTTCAGCTTACATTCACCTACCTTTCTGTCGAAAACGTTGCCACTACTGTGACTTCACCATCATTGCTCTAGGCTCCGCCGCTTCAACCCAAACAGACAATGACCCGCGAGTCTTAAACTACATACAATGGCTTTGCAGAGAAATTAACGCAACCGAAGTTGAAGAAGTTTCCAAGACACCCCTTCAAACGGTCTATTTTGGGGGTGGAACACCCTCCCTCGTCCCTCCAAGCATGGTTTCCTTGGTTATGGAGTCACTGAGGAAGAAATTCGGGTTGAGTGAGGATGCTGAAATCTCGATGGAAATGGACCCGGGCACGTTTGATGCTAAGAAGATGCGAGAGATGATGTTGTTGGGAGTGAACAGAGTGTCTTTGGGAGTTCAAGCATTTCAGGAGAAGCTGTTGATGACTTGTGGGAGGGCACATGGTGTGAAAGAAGTGTATGAGGCTATTGATATTGTAAAATCATGTGGGGTTGAGAATTGGAGTATGGATCTCATAGCTTCACTGCCTCATCAGACTCTTGATATGTGGGAGGAAAGTCTAAGGCTCACCATTGAGGCACAACCAAATCATGTTTCTGTTTATGATTTGCAAATAGAGCAAGGAACAAAATTTGCAAGACAGTATTCACCTGGGGAATTCCCACTTCCTTCTGAGACACAATCAGCTGATTTCTACAAGATGGCATCAAGAAGACTTTATGAAGCGAGTTATAACCACTATGAAATCAGCAGCTACTGCAAGAGTGGATATGAGAGCAAACACAACTTTACCTACTGGGAGAACAAGCCTTTCTATGGTTTTGGCCTCGGCTCTGCTAGTTTTATTGGAGGGTTGAGGTTTTCAAGACCAAAGAAGGTGAACGATTACGTGAGTTATGTGCAGAATCTGGAAAATGGATTAGTAAATAGCTCAGCTGATGAAGACAATCTTGTCAAGGACAGAGCCATGGATGTTGTGATGCTGTCCCTAAGAACTTCAAGAGGACTGGACTTGAAGTGTTTCCAAGAATCATTTGGCAGCTCTGTTGTTTTGTCTCTGATTGAGGCTTATAAACCTTATTTTGAGAGTGGACATGTGGTTTGCTTGGATGAGCAGAGGAGAACTATTAGTATAGATGATGATGGCCTCAGCAATTCTCTGTTGGGTAAAACTAACACAGAGAGGAGGCTGGTCTATTTAAGGTTAAGTGATCCAGAAGGTTTCCTCTTATCTAATGAGTTAATAGCCCTTGCTTTTGGAGTTATTGACTCTTGGAAGGATTGCCCTCCATGCCAAGAGGCTACTTGA 1458 0.4369 MLKSTFSPIFWVLAPKPKYPKLSPHAITNTFSNRTPVVRHNSSMKHPIITAPLPSSAYIHLPFCRKRCHYCDFTIIALGSAASTQTDNDPRVLNYIQWLCREINATEVEEVSKTPLQTVYFGGGTPSLVPPSMVSLVMESLRKKFGLSEDAEISMEMDPGTFDAKKMREMMLLGVNRVSLGVQAFQEKLLMTCGRAHGVKEVYEAIDIVKSCGVENWSMDLIASLPHQTLDMWEESLRLTIEAQPNHVSVYDLQIEQGTKFARQYSPGEFPLPSETQSADFYKMASRRLYEASYNHYEISSYCKSGYESKHNFTYWENKPFYGFGLGSASFIGGLRFSRPKKVNDYVSYVQNLENGLVNSSADEDNLVKDRAMDVVMLSLRTSRGLDLKCFQESFGSSVVLSLIEAYKPYFESGHVVCLDEQRRTISIDDDGLSNSLLGKTNTERRLVYLRLSDPEGFLLSNELIALAFGVIDSWKDCPPCQEAT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5263 485 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 56 412 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Lja1g5263 485 Gene3D tm_1862 like domain 62 283 IPR023404 -
Lja1g5263 485 SFLD HemN-like, clustered with heat shock genes 55 429 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Lja1g5263 485 SMART MiaB 54 284 IPR006638 GO:0003824|GO:0051536
Lja1g5263 485 SFLD anaerobic coproporphyrinogen-III oxidase like 55 429 - -
Lja1g5263 485 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 30 471 - -
Lja1g5263 485 Pfam Radical SAM superfamily 59 239 IPR007197 GO:0003824|GO:0051536
Lja1g5263 485 SUPERFAMILY Radical SAM enzymes 52 421 - -
Lja1g5263 485 PANTHER COPROPORPHYRINIGEN III OXIDASE 30 471 IPR034505 -
Lja1g5263 485 ProSiteProfiles Radical SAM core domain profile. 49 292 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5263 - K07739 pvu:PHAVU_009G169000g 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5263 1 79595122 79597428 Lja1g5263 1 79595122 79597428 ECH