Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5237 ATGAAGCTCGATACCACTGGTCTCGAATCGTTTCCTAAACTGGTTGCACCTGGAAACGACGTCGTTGGGGAGTTCACCGCACCCCCATCATTCGAGCTTCCCAATTCCAATGATTTTGATGGCTTCGTTAAAGAAGCTATTCAGATGGTGAAGCCCGCAAAGGGTACGACGACTCTTGCTTTTATATTTAAGGATGGTGTCATGGTAGCTGCTGATTCTCGTGCTAGCATGGGAGGGTATATATCTTCGCAGTCTGTTAAGAAAATTATTGAAATCAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGAAATCTTGGGATCAAGTGTCGGCTACATGAGTTGGCAAATAAAAGGAGAATTTCAGTAACAGGGGCCTCTAAGATGCTTGCAAACATTTTATACTCTTATCGTGGAATGGGGTTATCTGTTGGTACCATGATCGCTGGATGGGACGAGACGGGTCCTGGTCTATATTACGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCTGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGACAGCGGGTACAAATATGACATGTCAGTTGAGGAAGCTGCTGAGCTGGCTCGACGAGCAATTTATCATGCTACATTTCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTTTACCACGTGGGACCAAACGGATGGAAGAAATTGTCTGGTGATGATGTTGGGGAGCTTCATTACCATTACAACCCAGTTGTTCCAAGCACCGTGGAACAAGAAATGGTTGAGGCAGCTTGA 813 0.4563 MKLDTTGLESFPKLVAPGNDVVGEFTAPPSFELPNSNDFDGFVKEAIQMVKPAKGTTTLAFIFKDGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKMLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKYDMSVEEAAELARRAIYHATFRDGASGGVASVYHVGPNGWKKLSGDDVGELHYHYNPVVPSTVEQEMVEAA* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5237 270 Pfam Proteasome subunit 54 234 IPR001353 GO:0005839|GO:0051603
Lja1g5237 270 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 29 268 - -
Lja1g5237 270 CDD proteasome_beta_type_5 56 243 - -
Lja1g5237 270 PANTHER PROTEASOME SUBUNIT BETA 29 268 - -
Lja1g5237 270 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 56 260 IPR029055 -
Lja1g5237 270 ProSiteProfiles Proteasome beta-type subunit profile. 55 234 IPR023333 -
Lja1g5237 270 PRINTS Proteasome component signature 63 78 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lja1g5237 270 PRINTS Proteasome component signature 184 195 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lja1g5237 270 PRINTS Proteasome component signature 195 206 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lja1g5237 270 PRINTS Proteasome component signature 220 231 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lja1g5237 270 ProSitePatterns Proteasome beta-type subunits signature. 59 106 IPR016050 GO:0005839|GO:0051603
Lja1g5237 270 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 43 254 IPR029055 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5237 K02737 - gmx:100779240 521.161