Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5229 ATGGCACCACACGATCTCCGCCGCCCGTTCAAGCGACCGGCGATCTCCGACCAAGAGAGGCGCAGGCAGCACTCTCTCCTCCGCCAGGCACAGAATCGCCTCGACGCTCAGCGCCACGCTCGCTTCCTTGCCTCCACCGTCTTCTCCCTCTCATCCCAAACCCCCGATTCCTCCGAAATCGAACTCGACCTCGTACCCGAACCCGAAAACCAACCAGAGCCTTCACACAAAGAACTCGACGTCCTCGAAGCCTCGAAGCTGAAGGGCTCAGAAGCTCGCAAATGGTTCTCCAAACAGCTCATGCACCCTGAATGGATGATCGATATCCCTGACTCGCTCTCACCTAACTGGTTCGTGTTTGCAAGGCCTTCTGGGAAACGCTGTTTTGTTGTTTCCTGCAATGGAACAACGATAAGCCGGTTGAGGAACGGTTCGGTGCTGCACCGTTTCCCTTCCGCGTTACCAAGCGGCGCAAGGAAGAAGGACTCCGGTTCTTCTCAGTCTTACTCTATACTAGACTGCATCTTTCACGAGTTGGATCAAACTTACTATGTTATTGACATGGTTTGCTGGCGTGACTACTCACTTTACGATTGCACTGCAGAGTTCAGGTTCTTTTGGTTGAACTCCAAGGTTGCCGAGAGTGGTGCTTGTGACCCTCCTTCGCATTATCACAAGTATAGGTTCAGTTTGGTTCCCGTCTATAGTTGTGACAGGGATGGTCTTTATGCGGCTTATACCGCGCCTGTGCCTTATGTCAAAGACGGTCTTCTCTTTTATAACAAGCATGCACACTACCAAGCAGGAATAACGCCTTTAGTATTAGTTTGGAAGGATGAGAACTGCAGTCAATATGTTATGGACACGGACAGTAAAGGACAGGTTCCGAACCAGCAGCAGGTGGTTTTGGAGCTTCAAGAAGATGGAAAACTGACCACCTCTGATGATCCTCCAGTGGTATTCGGCTGTTTAGATGGAAGCTTTACACAGCAGTCAGAATTGCTCTCAGGATGTCTACTACGGTTTGCAATTGGAGAGGCAGGATTGGTTCTAGTGGATGGGAAGCTTGAGAAAGCTGACCTAAATTATCTTGGCAAGGTCAATCGAGCTCGCGCCTCAGCTGATAGTTTCTCTAAGGTTATGTTCCAATATAGCGTTCGACACTCCCCCCTCAGAATTGACGACCTGTTGGGATCTGTCAGCTCTCCAGTCGATGAAGAAAGCAAACCTTGCGATATTGAGATGGATGGTTGA 1254 0.5016 MAPHDLRRPFKRPAISDQERRRQHSLLRQAQNRLDAQRHARFLASTVFSLSSQTPDSSEIELDLVPEPENQPEPSHKELDVLEASKLKGSEARKWFSKQLMHPEWMIDIPDSLSPNWFVFARPSGKRCFVVSCNGTTISRLRNGSVLHRFPSALPSGARKKDSGSSQSYSILDCIFHELDQTYYVIDMVCWRDYSLYDCTAEFRFFWLNSKVAESGACDPPSHYHKYRFSLVPVYSCDRDGLYAAYTAPVPYVKDGLLFYNKHAHYQAGITPLVLVWKDENCSQYVMDTDSKGQVPNQQQVVLELQEDGKLTTSDDPPVVFGCLDGSFTQQSELLSGCLLRFAIGEAGLVLVDGKLEKADLNYLGKVNRARASADSFSKVMFQYSVRHSPLRIDDLLGSVSSPVDEESKPCDIEMDG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5229 417 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 96 278 - -
Lja1g5229 417 MobiDBLite consensus disorder prediction 1 23 - -
Lja1g5229 417 CDD Snurportin-1_C 95 280 - -
Lja1g5229 417 Gene3D DNA ligase/mRNA capping enzyme 2 305 - -
Lja1g5229 417 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 416 IPR017336 GO:0005634|GO:0005737|GO:0061015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5229 K13151 - gmx:100801927 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5229 1 78251770 78257027 Lja1g5229 1 78251770 78257027 ECH