Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5220 ATGGCTTGGCGCTTCTTCTCCATCTTCAAATCCTCCAAAACCCTATCCCCTAAGAACCCTAATCCCAATTTCTTCACTGCCCCATTTTCCACCTCCTTCTTAGTCACCAAAACCCCAAAAAAGCTCAAGAAAAAACACAAACCCAAACACAGTCCCCGAACCAACCCGGTCCAACCACAACCCAACCGCATCGCCGAACTGGAACGTATCCTCGACCGGGACGCACTCCTCCGGTTCGTCACCAAATCGAAGCAGTTCCTCTCCTCCCAGCCGGAGCATGTCCTCCGCCTCGACGACGCTGGGAAGCTCCACCGCGAGCTCGGCTTCCCTCGCGGCCGCAAGGTCTCCCGCTTCATCCAGGACCACCCGCTCCTCTTCCAGACCTACCGCCACTCCGACGGCAAAATGTGGCTCGGGTTCACCGACCTCATGGAAGATCTCCTCGCCGAGGAGCAATGCATCATGGACTCCATGGAGAAGGATCGCGTTGACAAGGTTCGGAGGTTGCTGATGATGTCTGCGCGTAACCGAATTGCTCTGAGTAAGATTCACCATTGTAGAACCCTTTTTGGAATCCCCCATGATTTTCGCGACCGGGTCGCGAAGTACCCGGGGTTTTTCCGGGTTGTGGTGGAGAGTGATGGGAGGAGGGTGCTTGAGTTGGTTAATTGGGACCCTGTTCTTGCGGTGAGTGCGCTTGAGAGGGAGTTTGTGGTTGATGAGGATGGTGCTAAGAGGAAATTTAGGTTTCCAGTGAAGCATGGGAAGGATTTGGATTTGGAGTTGGATGATGAGAGGAAGCTGAACCTGTTGAACACGCTTCCTTTGGTGTCTCCTTATTCGGATGGGTCGAAATTGGATGTGTGGACCTTGGAAGCGGAGAAGTATAGGGTTGGGGTAGTTCATGAGTTCTTGAATTTGACCTTGGAGAAGAGGGCCTCCATTCATCACCTTGTGGAGTTTAAGGAGGAGTTTAGTTTGACTAAGCATACTTATCACATGCTTCTTAAGCAGCCCCGAGCGTTTTATTTGGCCGGAACCGAGATGAACTGGGCTGTGTTCTTGAAGGATGCTTATGATAAAAATGGTGTTTTGATTGAGAAGGACCCCCAGGTGGTGTTCAATGAGAAGCTTTATAAGTATGCTCTCATGCAGGAGATGGAACCTGGTTCTGATGTTGGGATGGAAAAGCAACATTTAACTTGA 1206 0.5108 MAWRFFSIFKSSKTLSPKNPNPNFFTAPFSTSFLVTKTPKKLKKKHKPKHSPRTNPVQPQPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIPHDFRDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALEREFVVDEDGAKRKFRFPVKHGKDLDLELDDERKLNLLNTLPLVSPYSDGSKLDVWTLEAEKYRVGVVHEFLNLTLEKRASIHHLVEFKEEFSLTKHTYHMLLKQPRAFYLAGTEMNWAVFLKDAYDKNGVLIEKDPQVVFNEKLYKYALMQEMEPGSDVGMEKQHLT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5220 401 Pfam Plant organelle RNA recognition domain 63 385 IPR021099 GO:0003723
Lja1g5220 401 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 392 IPR045040 GO:0003723
Lja1g5220 401 MobiDBLite consensus disorder prediction 38 60 - -
Lja1g5220 401 MobiDBLite consensus disorder prediction 38 52 - -
Lja1g5220 401 PANTHER OS09G0473400 PROTEIN 1 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5220 Lja-Chr1 77830237 77831845 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5220 - - gmx:100813429 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5220 1 77830237 77831845 Lja1g5220 1 77830237 77831845 ECH