Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5218 ATGGAAACGGCGGAATCCTCTGTCAATCATCCCATCTTGTCTCTTCCGCTTATCGACCTCCGCCTGTTATCCCAACCAGAATTGCACTCCCTCTCCTTCTCCTCCGCCACCAACGGCGGCACCAACCACCACTTCGACATCCCCAAAATTCAAATTGACCGTTCAATTTTCAATGAGTCCGCCGGCAGCCGCAAGCAGACCTACTCCCGTCTCCGCCTTCTTCCGCGGAACAAATCCAATTCCCGTCGTTCCCCCTCCTCCTCCTCCTCCTCCTCCTTCCGCATTCCGCCGGAGCCAGAAAACTCCGACGTAGTTTCCTTCCTCAAAGGGCTTTTCGGCGTCGTACCACTCCGCGGTGCCAACAACGTCAACCCCCATGATCCTCTTCGGGTATTGGCCCTGCCGCCACCACCCGTGGCGGGCACCTTGCATAACGTTCCGATCGACGTCGTTGGTGGTAGCGGCCTGAACGTTCCGGTCGCCGTCGTTGATGGTAGTAGCAGCCAGACGAAGTCGAGGAAGCGCGGGCGGCCGCGCAAGAATCAAGAAGCTGTTGTTTCGGTTCCGGTGGGAAATGGGGTTGCGCAGGAGGAGGCGAAGGCGATGGCGATGGTGGTGGCTGTGGTTGAGGATGAGCAGAAGAATGGTTTGGTGGTGGGGGATGTTGGTGATCCGTTTGTTGAGCAGCTGATTGAGAGGACGCAAGGGTTGGTGACCGAGTCGCAGATGAGAGAGTTTATGGAGAGTTTGGAGGGAGTGTGGGCGAGTGATAGGAAGAAGAGGAGGATTGTGGATGCTAGGATTCTCTGTGATTTGTTGCCTCCTGGGTGGAAGCTCGTGCTTATTCTTCAGAGGAGAGCGGGTCGTTTTTCAGTGCTTTGTCGCTTCTACAAAAGCCCTGATGGACACCAATTTGAGTCGTACAAGGAAGTGTGTACACACCTTTCTTCCAACAATGGCAATTTCGCCATGGCATCTGAAAATCATCAGCATGTTGGTCATGTCCCTACATCCATGGAGACTGATGCCAATGCAATTTCTGCTTATCATGAAAAGCAGACCAGCATAGCATCATCGATTGGAACTGAGAAGCAGGCAAGCATAGCATCATCTATTGGAACTGAGAAGCTAAACATTTATGATGGGAATTCCAATAGTCATCTGGCTTTGGGTCATAAATTAGGAGATGCTGGTAGAGACTCTGACCAAACTGAAGATAAGCAACCATTGAAGGCTGATAAAAATGATGCAAATTCAGTTCAGGGATGTTCTCTTAAGCAGGATAATGAACCCCATGAGAATTCGGTTGGTGCTATTCAGGCTAGTGATGCTGCAGTTAATTTATATATTCCTCTGGTTTTCACATCTCCTTTATCTAATAATGATATTGGTATTGACCAACTTTCTGATGAAAGAAATGCTGTAACACGCACAAATAGTGGCATTTATAATTTTGATGGTCAGGATAGAAATACAGTATCCTATGAAACTGTTCCATGTGGAAAGGATCAAGCACATTTTGACAACTGTTCCACAGTCATGACACAGACGTCCATGCTGAAGGACTCTGCTGTGGGAAGTTTGTTTGATAATTATTTTCCTAGTGGTGGTGTCCCAGATGCATCCGGGTCTGGTGGAGTTGATTTTATTCCTGGCCTTAAAGTAGGTAAGGATGTTAATGATAATCATGTTTATCCAAATGAGGAAGTTGTGACAAGCTATTTACAGAAAAGGAGTTCCTCAGATGATCAAATGTTCACAATGGACAATTTGTTGGGTGGAAGTTTTGAAGGTAACTTATTTCCTCTGGCCAATAATCATCACCCTTCTGCTTTTCAAGATAATATGAATATCACTGCTGGAACTTTTGACGTGCTCAAATCTGTGGATGCTGGTTGTGTGGAGCCTCAGTTAGGCATTATTTCTTCTAGCAATGTTGTTGCAGCAGACGCATGTACATCTGCAAGAGTTATGCAGGGAACTTCTGAAGGACGTGTATCTGTTCCTCTTGGTGGAAGTATGTCAAACTGTTTTGACAAGCAATGCGATGATGATGTTAATAAAGAAAAGAAATCTTGCTTATCTGAGAAGGCTAAGAGTGAAGTTGAAATGTTCCAAAACGACTCTATGGGTATGTCCAAATTCCAGTAG 2151 0.4677 METAESSVNHPILSLPLIDLRLLSQPELHSLSFSSATNGGTNHHFDIPKIQIDRSIFNESAGSRKQTYSRLRLLPRNKSNSRRSPSSSSSSSFRIPPEPENSDVVSFLKGLFGVVPLRGANNVNPHDPLRVLALPPPPVAGTLHNVPIDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVPVGNGVAQEEAKAMAMVVAVVEDEQKNGLVVGDVGDPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRRIVDARILCDLLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHLSSNNGNFAMASENHQHVGHVPTSMETDANAISAYHEKQTSIASSIGTEKQASIASSIGTEKLNIYDGNSNSHLALGHKLGDAGRDSDQTEDKQPLKADKNDANSVQGCSLKQDNEPHENSVGAIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNSGIYNFDGQDRNTVSYETVPCGKDQAHFDNCSTVMTQTSMLKDSAVGSLFDNYFPSGGVPDASGSGGVDFIPGLKVGKDVNDNHVYPNEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDNMNITAGTFDVLKSVDAGCVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMSNCFDKQCDDDVNKEKKSCLSEKAKSEVEMFQNDSMGMSKFQ* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5218 716 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 263 335 IPR001739 GO:0003677
Lja1g5218 716 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 368 IPR037472 -
Lja1g5218 716 Pfam Methyl-CpG binding domain 267 320 IPR001739 GO:0003677
Lja1g5218 716 MobiDBLite consensus disorder prediction 67 97 - -
Lja1g5218 716 MobiDBLite consensus disorder prediction 393 413 - -
Lja1g5218 716 MobiDBLite consensus disorder prediction 67 99 - -
Lja1g5218 716 MobiDBLite consensus disorder prediction 391 433 - -
Lja1g5218 716 Gene3D - 248 364 - -
Lja1g5218 716 SUPERFAMILY DNA-binding domain 265 318 IPR016177 GO:0003677
Lja1g5218 716 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 368 - -
Lja1g5218 716 MobiDBLite consensus disorder prediction 414 433 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5218 - - lja:Lj0g3v0208169.1 1357.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5218 1 77793367 77800253 Lja1g5218 1 77793367 77800253 ECH