Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5212 ATGGAGGAGCGGGTCTTGCCGCCACCGCCACCACCTCCTCCGCACAGCCCAAAACTCCAGCTCCCTGACATCAACTCTGACACGTACGTTGTCCAAGTCCCTAAGGACCAAATATACCGCGTTCCACCACCACAAAATGCCCGCATTGCCGAGCTCCATAGGCAAACTCCACCAAAAGACACGAATCGATCACGTTGTTGTTGGTGTTGGGTGTTCTTCATCATCATCTTCATCGCCATCGTCATCATTGTCGGAGCCATTCTAGGTGGCCTTTTCTCCGAAGTACTCAAACCAAAGGACCCTAAATTTTCCATCCAACGCTTCCACCTACAAAGCAAACCACACAAGCAATACGACATCACTTTGCAAGCCCACAACCCGAACTCCAAAGTGGGAATTTCATATAAAGAAGGAGGGAGTGCTTCCCTCTCTTTAAAGAAACAAAAGAACAACAACATTGGTAGTGGGTCCTACCCCACATTCTACCAGCCGCATGATGACTCGACCGTGTTTGATGTAACCTTAAAAAGCGCCAAGCCTGATTTCCCTAAAGTGGTGCAAGAGAGCATGGCGAAGGGGAAGAGCAAAACGCATGTTGTGTTCTCATTGGCCATTCACGTTGAAGCGCAAATTAAAATGTGGTTGTTTCAAAGTGGGACGATGAAATACGACGTTGCGTGCCAGGTAACGGTGGTTGGTTTGGACAAAACTGCTCGTCTGGTTTCTCAAGAGTGTGAAACAAAACGACACTAG 753 0.4834 MEERVLPPPPPPPPHSPKLQLPDINSDTYVVQVPKDQIYRVPPPQNARIAELHRQTPPKDTNRSRCCWCWVFFIIIFIAIVIIVGAILGGLFSEVLKPKDPKFSIQRFHLQSKPHKQYDITLQAHNPNSKVGISYKEGGSASLSLKKQKNNNIGSGSYPTFYQPHDDSTVFDVTLKSAKPDFPKVVQESMAKGKSKTHVVFSLAIHVEAQIKMWLFQSGTMKYDVACQVTVVGLDKTARLVSQECETKRH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5212 250 MobiDBLite consensus disorder prediction 1 19 - -
Lja1g5212 250 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g5212 250 Pfam Late embryogenesis abundant protein 122 214 IPR004864 -
Lja1g5212 250 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 8 248 - -
Lja1g5212 250 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 8 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5212 Lja-Chr1 77573664 77574416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5212 28 247 EF-hand Containing Proteins AT5G21130 31.739 3.92e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5212 - - gmx:100790243 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5212 1 77573664 77574416 Lja1g5212 1 77573664 77574416 ECH