Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5182 ATGGAGCATTTCAACAACGATGACCTCGAGTACGTCGTCGACGATGGCTTCTACTCCGACAACGCCTCCGACTTCGAAGACGACCACCACGCCTTCTCCTCCGACGACAAACGGAGCTCCTCCTCCGCCGATTCCCCTGACTCCGACTCCGACTCCGATTTTGAAACGAGTGGTAATAATAGTGCGAAAACTGACACCTCTGCTTCGGAAGCGAGGAACGGGAAGGATATCCAGGGAATTCCATGGGAGAAGCTTAATTATAGCAGAGACGAGTACCGTGTCACGAGATTGAAGCAGTACATGAACTATGAGAATCTCTCTCGTTCACGTGAAGACCTACACAAGGAGTGCTTGGAAGTGCAGAAAGGGAAGAGCTTCTATGACTTCCAGTTCAATACCAGGCTTGTCAAGTCCACAATTCTGCATTTTCAGCTGAGGAATTTGTTGTGGGCAACATCAAAGCATGATGTGTACCTTATGCAGAACTATTCAGTGATGCATTGGTCCTCACTACTCCGAAAGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCGAACCTTAAGCGTACTGGCTTTTTAGCTCAACCTGTCTCCAGAGTGCAAGTAAGCACCATGGCTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGGGAGGTTATTTGTAAGAATTTGAATCAGTCTGGAGTTGCATTCTGCAGTAAAATAACTACAGATGACAATGCCATCACCAATGCTGTGGATGTTTTCCGCAATCCTGGTGGATCATTGAGGGTCATCGCAGCAAATAATGACTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGTTTGGTCTGTCAACAATATTTCTGCTAGTCCGGACGGCAAGTCGTTAGCTGTTCTTGGGGACAGTACCGAGTGTTTGATAGCTGATGTTAATACCGGGAAGGTTACTGGGAGCCTAAAAGGACACTTGGACTATTCTTTTGCATCTGCTTGGCACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCGGTGCTCAAGGGAAGAATGGGTGCAATAAGGGCCTTAAGGTTCACATCTGATGGAAGGTTTTTGGCCATGGCTGAACCAGCTGACTTCATCCATGTTTTTGACTCACATTCTGGATATGAGCAATGTCAAGAGATAGATATATTTGGTGAGATTGCTGGAGTATCGTTTAGCCCGGACACAGAGGCTCTGTTTGTTGGTGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACCAGAAATCGTAATCATCATTATGTAGATACCATGTTTTAA 1377 0.4582 MEHFNNDDLEYVVDDGFYSDNASDFEDDHHAFSSDDKRSSSSADSPDSDSDSDFETSGNNSAKTDTSASEARNGKDIQGIPWEKLNYSRDEYRVTRLKQYMNYENLSRSREDLHKECLEVQKGKSFYDFQFNTRLVKSTILHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRKGKEVLNVAKPIIPNLKRTGFLAQPVSRVQVSTMAVKENLMVAGGFHGEVICKNLNQSGVAFCSKITTDDNAITNAVDVFRNPGGSLRVIAANNDSQVRVFDAENFASLGCFKYVWSVNNISASPDGKSLAVLGDSTECLIADVNTGKVTGSLKGHLDYSFASAWHPNGQILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFIHVFDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTRNRNHHYVDTMF* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5182 458 MobiDBLite consensus disorder prediction 52 73 - -
Lja1g5182 458 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 457 - -
Lja1g5182 458 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Lja1g5182 458 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Lja1g5182 458 SMART WD40_4 319 358 IPR001680 GO:0005515
Lja1g5182 458 SMART WD40_4 275 316 IPR001680 GO:0005515
Lja1g5182 458 SMART WD40_4 362 401 IPR001680 GO:0005515
Lja1g5182 458 MobiDBLite consensus disorder prediction 24 75 - -
Lja1g5182 458 Gene3D - 187 367 IPR015943 GO:0005515
Lja1g5182 458 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Lja1g5182 458 Gene3D - 368 442 IPR015943 GO:0005515
Lja1g5182 458 PANTHER OS03G0386000 PROTEIN 1 457 - -
Lja1g5182 458 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 361 - -
Lja1g5182 458 SUPERFAMILY WD40 repeat-like 198 438 IPR036322 GO:0005515
Lja1g5182 458 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5182 Lja-Chr1 76292737 76298314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5182 304 438 Miscellaneous Gene Families AT5G08390 29.452 1.88e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5182 - - gmx:100775453 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5182 1 76292737 76298314 Lja1g5182 1 76292737 76298314 ECH