Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5173 ATGGCTGCTGAAGTATGTCATCAGGCTATTGGCACTTTGCAGTCTCATTCTTTTCTTAATAATTTGAATCATCCCCAAAAGGTTGGGAACAATTTAGTAAGATTGGTAACAAAGGATTTTATCAGTACTAATGGCCTTTCAAGGAGTGGAAGTAGCTACTGTGGCCAGATGAATCGTCGTAGTGTTGTTATTCGATCTTCAGCTTCCCAGACATCAATTGTTGATCCAGTGTCATCATCTCCTTCAAAAAGCAACAGCAGTGACAAACCCAAGAAATCAAATGAAGCAGCTTTGATCCTTATTCGGCATGGTGAGTCATTATGGAATGAGAAGAATTTGTTCACAGGTTGTGTTGATGTCCCACTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGTAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTTACATCTGCTCTGATCCGCGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTAAAAAGGTTCCTATCGTTATGCACAATGAGAGTGAACAAGCAAAGGCATGGAGTCAAGTTTTTAGTGAAGACACAATAAAACAGTCCATTCCAGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAATTACAGGGCCTCAATAAGCAAGAAACAGCTGACAGATATGGCAAAGAGCAAGTCCATGAGTGGCGCCGAAGTTATGACACACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTCAAAGAGCAGTTGCCTATTTCAGAGACCATATTGAACCTCAGCTTTTATCTGGAAAGAATGTTATGATTGCTGCCCATGGGAATTCATTAAGATCCATTATCATGTATCTTGACAAATTAACTTCCCAAGAGGTCATTAGTCTAGAACTGTCAACTGGAATTCCTATGCTTTACATTATCAAAGAGGGTAGATTCATTAGGAGAGGGAGTCCCATAGCACCAACTGAAGCTGGAGTTTATGCCTATACCAAGCGTTTGGCTCTTTATAAGCAAAAGTTGGATGAGATGTAA 1041 0.4083 MAAEVCHQAIGTLQSHSFLNNLNHPQKVGNNLVRLVTKDFISTNGLSRSGSSYCGQMNRRSVVIRSSASQTSIVDPVSSSPSKSNSSDKPKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRKKVPIVMHNESEQAKAWSQVFSEDTIKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDTPPPNGESLEMCAQRAVAYFRDHIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIIKEGRFIRRGSPIAPTEAGVYAYTKRLALYKQKLDEM* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5173 346 SUPERFAMILY Phosphoglycerate mutase-like 98 314 IPR029033 -
Lja1g5173 346 CDD HP_PGM_like 98 317 IPR013078 -
Lja1g5173 346 MobiDBLite consensus disorder prediction 72 87 - -
Lja1g5173 346 Pfam Histidine phosphatase superfamily (branch 1) 98 169 IPR013078 -
Lja1g5173 346 Pfam Histidine phosphatase superfamily (branch 1) 195 300 IPR013078 -
Lja1g5173 346 Gene3D - 87 320 IPR029033 -
Lja1g5173 346 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 100 109 IPR001345 GO:0003824
Lja1g5173 346 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 1 346 - -
Lja1g5173 346 MobiDBLite consensus disorder prediction 72 92 - -
Lja1g5173 346 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 95 322 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lja1g5173 346 PANTHER PHOSPHOGLYCERATE MUTASE 1 346 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lja1g5173 346 SMART PGAM_5 97 283 IPR013078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5173 Lja-Chr1 76048473 76052421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5173 K01834 - gmx:100802621 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5173 1 76048473 76052421 Lja1g5173 1 76048473 76052421 ECH
Lja1g5940 1 108872733 108875877 Lja1g5173 1 76048473 76052421 PCT