Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5172 ATGGCTTTCAGATTTGCGTTTCTGCTTGTTCTGTGTGTGGTTCCGGCGATGGTTGCTGCCATTCGCCCAGCTAAGAACCCTTTCATCGTCAAAGGTTGCGTCTACTGTGACCCATGCCGTGCTGGTTTTGAGACCTCAGCCACTACCCGCATTGCTGGTGCGGAGGTTATGCTGCTGTGTAGGCAGAAGAATTCCAACGAAGTTGTATACACAAAGCGGGGCTGGACTAACTCAAAGGGTGAATACACAATCTCCGTGTCTGAGGATCACGGCGACCAGATCTGTGATGCCAAGCTTATAAGCAGCCCTCATCCAACCTGCAAAGAGGCCACCCCAGGCCGTGACCAAGCCCGTGTTATTCTCACCCGCTACAATGGCATTGCCTCTGATGATAGGTTTGCCAATGCCATGGGCTTCATGTCTGAGAATGTTGCTGCTGGCTGTACTCAGATCCTCAAGCAATACGAGGAGCTCGATAATGAGAACTAA 489 0.5133 MAFRFAFLLVLCVVPAMVAAIRPAKNPFIVKGCVYCDPCRAGFETSATTRIAGAEVMLLCRQKNSNEVVYTKRGWTNSKGEYTISVSEDHGDQICDAKLISSPHPTCKEATPGRDQARVILTRYNGIASDDRFANAMGFMSENVAAGCTQILKQYEELDNEN* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5172 162 Pfam Pollen protein Ole e 1 like 30 111 - -
Lja1g5172 162 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 4 161 IPR006041 -
Lja1g5172 162 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 4 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5172 Lja-Chr1 76019360 76021534 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5172 - - lja:Lj1g3v0641840.1 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5172 1 76019360 76021534 Lja1g5172 1 76019360 76021534 ECH
Lja1g5939 1 108867638 108869127 Lja1g5172 1 76019360 76021534 PCT