Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5170 ATGGCGACCATGGGGGGTGGGAATGGATATATAAATGGTGTACTCCCCAACAAGCACCTTGCTACAATATCTGAAGTAACTGAATTCTGCAACGCCCTTGGGGGGAACAGGCCAATTCATAGCATATTGATTGCAAACAATGGAATGGCAGCGGTCAAGTTCATGCGCAGTGTTAGGAGCTGGGCCTATGAGGCATTTGGCACGGAGAAGGCTATCTTGTTGGTTGCCATGGCTACACCAGAGGATATGAGAATCAATGCAGAACATATCAGAATAGCTGATCAATTTGTGGAAGTACCTGGTGGGACCAATAACAATAACTATGCCAATGTGCAGCTTATTGTCGAGATGGCTGAGATAACTCATGTTGATGCGGTGTGGCCTGGTTGGGGTCATGCATCCGAGAATCCTGAGCTTCCTGATGCACTAAAAGAAAAAGGAATTGTATTTCTTGGACCTCCTGCTGTATCTATGGCAGCATTGGGAGATAAAATTGGTTCGTCTTTGATAGCTCAAGCAGCTTCTGTGCCAACCCTTCCATGGAGTGGTTCTCATGTGAAAATTCCTCCTGACAGTTCATTGATTACTATTCCTGATGAAATTTATCGGGAAGCGTGTGTTTATACCACGGAAGAAGCAATTGCCAGTTGTCAAGTTGTAGGATACCCTGCAATGATCAAAGCATCTTGGGGTGGTGGTGGTAAAGGAATAAGAAAGGTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGGTCACCTATATTTATAATGAAGGTCGCATCCCAGAGCCGACATCTAGAAGTCCAGTTAGTTTGTGACCAGTATGGAAATGTTGCAGCTTTACATAGTCGTGATTGCAGTGTTCAAAGGAGGCATCAAAAGATTATCGAGGAGGGTCCTATTACTGTAGCACCTCAGGCAACGGTGAAACAACTAGAGCAGGCAGCTAGAAGATTGGCTAAATCTGTAAATTATGTTGGGGCAGCTACTGTTGAGTATCTATATAGTATGGAAACTGGCGAGTACTACTTTTTAGAGTTGAACCCCCGACTACAGGTTGAGCATCCTGTTACTGAATGGATAGCAGAGATAAATCTGCCAGCAGCACAAGTTGCCATTGGGATGGGAATCCCTCTCTGGCAAATTCCTGAGATAAGGCGTTTCTATGGGGTGGAACACGGTGGAGGGAATGATGCTTGGAGGAAAACATCAGTTTCAGCTACTCCTTTTGATTTTGACAAAGCAGAATCTACTAGGCCAAAAGGTCATTGTGTGGCTGTTCGAGTCACTAGTGAGGACCCTGATGATGGTTTTAAGCCTACTGGTGGGAAAGTGCAGGAGCTCAGCTTTAAAAGTAAGCCAAATGTGTGGGCATACTTCTCTGTTAAGTCTGGAGGAGGGATCCATGAATTCTCAGATTCTCAGTTTGGGCATGTTTTTGCTTTTGGAGAATCAAGGGCTTTAGCAATTGCAAATATGGTTTTGGGGCTGAAGGAGATTCAAATTCGGGGAGAAATTCGTACAAATGTTGATTACACCATTGATCTTCTGAATGTTGCAGACTACAGAGATAACAAAATCCACACAGGATGGCTGGACAGTAGAATTGCTATGCGGGTTAGAGCAGAGAGGCCTCCCTGGTATCTTTCTGTTGTTGGAGGGGCACTCTATAAAGCTTCTGCTAGCAGTGCAGCTTTGGTTTCTGACTATATTGGCTATCTTGAAAAGGGGCAAATCCCTCCCAAGCATATATCTCTTGTCCATTCTCAAGTGTCTTTGAACATTGAAGGAAGCAAATATACGATTGACGTGATGCGAGGAGGACCTGGAAGTTATAAATTGAGATTGAATGAATCAGAAATAGAAGCTGAGATACATACTTTACGTGATGGAGGTTTGCTGATGCAGTTGGATGGTAACAGTCATGTAATATACGTAGAGGAAGAAGCAGCTGGAACTCGCCTTCTAATTGATGGAAGGACTTGCTTGCTTCAGAATGATCATGATCCGTCAAAGTTAATTGCAGAGACACCATGCAAGCTTCTGAGGTATTTGGTTGTGGATGACAGTCATGTTGATGCTGACACACCATATGCTGAAGTTGAGGTTATGAAGATGTGCATGCCTCTTCTTTCACCTGCTTCTGGGAAAATTCATTTCAAAATGTCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGGCTTGATCTAGATGATCCTTCAGCTGTAAGAAAGGCGGAACCCTTCACTGGGAACTTCCCAGTCTTGGGTTTTCCTACTGCAATTTCAGGTAAAGTTCATCAGAAATGTGCCGCAAGCTTAAATGCTGCACGGATGATTCTTGCTGGCTATGAGCACAATATTGATGAGGTTGTGCAAAGTTTGCTCAATTGCCTTGACAGTCCTGAATTACCTTTCCTTCAATGGCAAGAGTGCTTCGCAGTTCTGGCAACTCGTCTTCCTAAAGAACTAAAAAATGAGTTGGAATCAAAATATAAGGAGTTCGAGAGGATTTCAAGCTCCCAAATTGTTGATTTCCCTGCCAAATTATTGAAGGGAATTCTTGAAGCTCACCTTTCCTCCTGTCCCGAAAACGAAAAAGGAGCCCAAGAAAGACTAGTTGAACCTCTGTTGAGTCTTGTGAAGTCTTATGAGGGTGGAAGAGAGAGTCATGCCCATATAATTGTTCAATCCCTTTTTGAAGAGTATCTTTTTGTTGAAGAACTATTTAGTGATAACATACAGGCTGATGTAATTGAACGTCTCCGTCTTCAGTACAAGAAAGATTTGTTAAAGATTGTAGATATAGTGCTCTCTCACCAGGGTATCAAGAGTAAAAATAAGCTCATACTGCGACTGATGGATAAACTGGTTTACCCTAACCCTGCTGCCTATAGGGATCAATTGATCCGTTTCTCTGCTCTCAACCATACAAACTATTCTCAGTTGGCTCTTAAGGCAAGTCAACTGCTGGAACAAACTAAGTTGAGTGAACTACGATCCAGTATTGCTAGAAGTCTTTCTGAACTTGAGATGTTCACTGAGGATGGTGAAACTATTGATACTCCAAGGAGGAAGAGTGCCATTAATGACCGAATGGAGGACCTTGTCAGTGCTCCTTTGGCAGTTGAAGATGCCCTTGTGGGTTTATTTGATCACAGTGATCACACCCTTCAAAGGAGGGTTGTGGAAACTTATATACGAAGGCTCTACCAGCCATATCTCGTCAAAGGGAGTGTAAGGATGCAGTGGCACAGATCTGGTCTTATTGCTACATGGGAGTTCTTTGAAGGGTATATTGAACGGAAGAATGGGGTTGAAGACCAGACGGATAAAGCACTGGTGGAGGGACATAGTGAGAAAAAATGGGGAGTGATGGTTATTATTAAATCTCTACAGTTTTTGCCTGCAATTATCAGTGCTGCATTAAGGGAAGCAACTGGTAACCTTCCCAAAGAACTTACAAGTGGTTCTGGTGACACCAATATCTATGGTAATATGATGCATATTGGATTAGCGGGCATCAATAACCAAATGAGTTTACTGCAAGACAGTGGTGACGAGGATCAGGCTCAAGAAAGAATCAATAAGTTAGCCAAAATACTCAAAGATCAGGAAGTAGGCTCCACAATACGCGCTGCAGGTGTTGGAGTAATCAGCTGTATCATACAGAGGGATGAAGGGCGTGCCCCAATGAGACACTCCTTTCACTGGTCATCTGAAAAGCTCTACTATGCTGAGGAACCTCTGTTGCGTCACCTTGAACCTCCCCTATCCATTTATCTTGAATTGGACAAACTTAAACACTATGAGAATATACGGTACACCCCATCTCGAGATCGTCAATGGCATCTATACACGGTTGTAGATCAGAAGCCACAACCAATTCAAAGAATGTTTCTCCGAACACTTCTAAGACAGCCAACCACAAATGAAGGATTCTCTTCTTATCAAAGGCTGAATGCAGAAACATCTCGTACCCAATTAAGTATGTCCTATACTTCAAGGAGCATCTTTAGGTCCTTGATGACTGCAATGGAGGAGCTGGAACTTAATGCACATAATGCCGCCATCAAACCTGAACATGCTCATATGTATCTCTATATCATACGCGAGCAACACATAGAAGACCTTGTGCCTTATCCCAAGAGAATTAACATCGATGCTGGTCGAGAAGAAGCAATAGTTGAGGCAATCTTGGAAGAACTGGCTCACGAAATCCATTCATCTGTTGGAGTAAGAATGCATAGATTAGGGGTGGTTGTGTGGGAAGTCAAGCTCTGGATGGCTGCTTGTGGACAGGCAAATGGTAATTGGAGGGTCATTGTAAACAATGTGACTGGTCATACATGCACTGTACATATATATAGAGAAGTAGAGGATGCCACCACTCATAAAGTGGTATACAGTTCAATCAACGTAAAGGGTCCTCTGCATGGTGTGCCAGTGAATGAGAACTATCAATCTTTGGGAGTTCTTGACCGGAAACGTCTTTCAGCAAGAAAGAATAGCACCACATACTGCTACGATTTTCCCCTGGCATTTAAAAGAGCCTTGGAGCATTCATGGGAAATCCAACAGCCAGGAATTGAAAGAGCCAAAGATCTTCTAAAAGTAACAGAGCTTACGTTTGCTGACAAAGAAGGTAGCTGGGGTACTCCGCTTGTTCCTGTGGAGCGTCCTCCTGGTCTCAATGATGTCGGCATGGTAGCCTGGCTTCTGGAAATGTGTACCCCTGAATTCCCATCTGGAAGGACTATATTGGTTGTTTCAAATGATGTGACCTTCAAGGCTGGTTCTTTTGGCCCAAAAGAGGATGCATTCTTTCGTGCAGTAACTGATCTTGCATGCGCAAGAAAACTGCCTTTAATTTATTTAGCAGCAAACTCTGGTGCCCGATTAGGTGTAGCTGAGGAAGTCAAAGCCTGTTTCAGAGTTGGTTGGTCTGAAGAATCTAAACCTGAGCAAGGTTTTCAGTATGTATATTTAACACCTGAGGATTATGCTCAGATTGGATCATCAGTGATAGCACATGAATTAAAGCTTGAGAGTGGAGAAACCAGATGGGTTATAGATACCATTGTTGGCAAGGAGGATGGCCTCGGGGTTGAAAACTTGAGTGGAAGCGGGGCCATTGCTGGTGCCTATTCTAAGGCATACAAGGAAACTTTTACATTGACCTACGTGACTGGTAGGACTGTTGGAATCGGTGCTTATCTTGCAAGGCTCGGGATGAGGTGCATACAGAGGCTTGATCAGCCCATAATTCTCACTGGTTTCTCAGCATTAAACAAACTTCTTGGTCGGGAGGTATACAGCTCTCACATGCAGCTTGGTGGACCTAAAATCATGGCAACTAATGGAGTTGTTCATCTTACAGTTTCAGATGACCTTGAAGGTGTCTCTTCTATTTTAAAGTGGCTTAGCTACATTCCTTCCCATGTAGGTGGTGTGCTTCCCATTGTAAAGCCCCTTGATCCTCCAGAGAGACTGGTGGAGTATTTCCCAGAGAATTCGTGCGATCCTCGTGCCGCCATTTCGGGAACTCTGGATAGTAACGGAAAGTGGCTGGGAGGCATTTTTGACAAGGATAGCTTTGTGGAGACGCTAGATGGGTGGGCGAGGACGGTTGTTACAGGAAGAGCAAAGCTTGGAGGAATCCCTGTGGGAATTGTTGCTGTAGAAACACAGACAGTTATGCAAATAATACCTGCTGATCCGGGCCAGCTTGATTCTCATGAGCGGGTTGTTCCTCAAGCCGGGCAAGTGTGGTTTCCTGATTCCGCAACTAAGACGGCTCAAGCAATACTGGATTTCAACAAAGAAGAGCTCCCGCTTTTCATTATGGCAAACTGGAGAGGCTTTTCAGGTGGGCAAAGGGACCTTTTTGAAGGAATCCTTCAGGCCGGTTCGACTATTGTGGAGAACCTGAGAACATACAAGCAGCCAATCTTCGTATACATCCCTATGATGGGTGAACTTCGTGGAGGGGCGTGGGTTGTTGTTGACAGTCGAATCAATTCAGACCACATTGAAATGTATGCCGAACGAACAGCTAAAGGTAATGTCCTTGAGCCAGAAGGAATGATTGAGATCAAATTCAGAACAAGAGAATTGTTGGAGTGTATGGGTAGACTTGATCAACAGTTGATAACCCTGAAGGCGAAACTTCAGGAAGCCAAGACTAACAGAGACCCTGGTACCATTGAGTCCCTGCAGCAGCAGATTAAATCCCGTGAGAAACAGCTTTTGCCTATGTATACCCAGATAGCTACCAAGTTTGCTGAACTTCATGATACTTCCCTGAGAATGGCTGCAAAGGGTGTAATCAGAGAAGTTCTGGACTGGGCTAACTCTCGTGCTGTCTTCTACCGGCGACTGCACCGAAGAGTTGGCGAGCATTCACTGATCAACAGTGTGAGAGATGCTGCTGGGGACCAATTGTCTCACACGTCTGCGATGAACATGATCAAAAGCTGGTATTTGAGTTCTGATATTGCCAAAGGAAGAGAAGAGGCTTGGTTGGATGATGAAGCCTTCTTCAGATGGAAGGCTGATCCTGCAAATTATGAGGATAAACTGAAGGAATTGCGCGTCCAGAAACTGTTGCTTCAATTGACAAATATTGGGGACTCAGCTCTAGATTTGCAAGCTCTACCTCAAGGTCTTGCTGCCCTTTTAAGCAAGTTGGAGGCATCAAGTCGTGACAAATTGACTGATGAACTTCGCAAGGTACTTGGATAG 6774 0.4415 MATMGGGNGYINGVLPNKHLATISEVTEFCNALGGNRPIHSILIANNGMAAVKFMRSVRSWAYEAFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEMAEITHVDAVWPGWGHASENPELPDALKEKGIVFLGPPAVSMAALGDKIGSSLIAQAASVPTLPWSGSHVKIPPDSSLITIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLVCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQATVKQLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAIGMGIPLWQIPEIRRFYGVEHGGGNDAWRKTSVSATPFDFDKAESTRPKGHCVAVRVTSEDPDDGFKPTGGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNVADYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYIGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDVMRGGPGSYKLRLNESEIEAEIHTLRDGGLLMQLDGNSHVIYVEEEAAGTRLLIDGRTCLLQNDHDPSKLIAETPCKLLRYLVVDDSHVDADTPYAEVEVMKMCMPLLSPASGKIHFKMSEGQAMQAGELIARLDLDDPSAVRKAEPFTGNFPVLGFPTAISGKVHQKCAASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECFAVLATRLPKELKNELESKYKEFERISSSQIVDFPAKLLKGILEAHLSSCPENEKGAQERLVEPLLSLVKSYEGGRESHAHIIVQSLFEEYLFVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGIKSKNKLILRLMDKLVYPNPAAYRDQLIRFSALNHTNYSQLALKASQLLEQTKLSELRSSIARSLSELEMFTEDGETIDTPRRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQPYLVKGSVRMQWHRSGLIATWEFFEGYIERKNGVEDQTDKALVEGHSEKKWGVMVIIKSLQFLPAIISAALREATGNLPKELTSGSGDTNIYGNMMHIGLAGINNQMSLLQDSGDEDQAQERINKLAKILKDQEVGSTIRAAGVGVISCIIQRDEGRAPMRHSFHWSSEKLYYAEEPLLRHLEPPLSIYLELDKLKHYENIRYTPSRDRQWHLYTVVDQKPQPIQRMFLRTLLRQPTTNEGFSSYQRLNAETSRTQLSMSYTSRSIFRSLMTAMEELELNAHNAAIKPEHAHMYLYIIREQHIEDLVPYPKRINIDAGREEAIVEAILEELAHEIHSSVGVRMHRLGVVVWEVKLWMAACGQANGNWRVIVNNVTGHTCTVHIYREVEDATTHKVVYSSINVKGPLHGVPVNENYQSLGVLDRKRLSARKNSTTYCYDFPLAFKRALEHSWEIQQPGIERAKDLLKVTELTFADKEGSWGTPLVPVERPPGLNDVGMVAWLLEMCTPEFPSGRTILVVSNDVTFKAGSFGPKEDAFFRAVTDLACARKLPLIYLAANSGARLGVAEEVKACFRVGWSEESKPEQGFQYVYLTPEDYAQIGSSVIAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSKAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSSILKWLSYIPSHVGGVLPIVKPLDPPERLVEYFPENSCDPRAAISGTLDSNGKWLGGIFDKDSFVETLDGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNKEELPLFIMANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYAERTAKGNVLEPEGMIEIKFRTRELLECMGRLDQQLITLKAKLQEAKTNRDPGTIESLQQQIKSREKQLLPMYTQIATKFAELHDTSLRMAAKGVIREVLDWANSRAVFYRRLHRRVGEHSLINSVRDAAGDQLSHTSAMNMIKSWYLSSDIAKGREEAWLDDEAFFRWKADPANYEDKLKELRVQKLLLQLTNIGDSALDLQALPQGLAALLSKLEASSRDKLTDELRKVLG* 2258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5170 2257 Pfam Biotin-requiring enzyme 683 745 IPR000089 -
Lja1g5170 2257 Gene3D - 676 747 - -
Lja1g5170 2257 ProSiteProfiles ATP-grasp fold profile. 191 383 IPR011761 GO:0005524|GO:0046872
Lja1g5170 2257 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1496 1833 IPR011762 -
Lja1g5170 2257 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1837 2152 IPR011763 GO:0016874
Lja1g5170 2257 SUPERFAMILY PreATP-grasp domain 21 161 IPR016185 -
Lja1g5170 2257 SUPERFAMILY ClpP/crotonase 1828 2216 IPR029045 -
Lja1g5170 2257 Gene3D - 164 204 - -
Lja1g5170 2257 Gene3D - 1827 2226 - -
Lja1g5170 2257 Gene3D - 206 268 IPR013815 GO:0005524
Lja1g5170 2257 Gene3D Biotin dependent carboxylase carboxyltransferase 1645 1709 - -
Lja1g5170 2257 ProSitePatterns Biotin-requiring enzymes attachment site. 703 720 IPR001882 -
Lja1g5170 2257 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Lja1g5170 2257 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Lja1g5170 2257 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Lja1g5170 2257 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Lja1g5170 2257 Gene3D - 269 527 - -
Lja1g5170 2257 SUPERFAMILY ClpP/crotonase 1497 1823 IPR029045 -
Lja1g5170 2257 Coils Coil 2053 2073 - -
Lja1g5170 2257 Pfam Acetyl-CoA carboxylase, central region 746 1489 IPR013537 GO:0003989|GO:0005524|GO:0006633
Lja1g5170 2257 CDD biotinyl_domain 681 745 - -
Lja1g5170 2257 Pfam Carboxyl transferase domain 1589 2140 IPR034733 -
Lja1g5170 2257 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Lja1g5170 2257 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 7 2256 - -
Lja1g5170 2257 Gene3D - 1497 1822 - -
Lja1g5170 2257 PANTHER BNAC06G01580D PROTEIN 7 2256 - -
Lja1g5170 2257 SMART Biotin_carb_C_2 434 541 IPR005482 -
Lja1g5170 2257 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Lja1g5170 2257 Gene3D - 11 163 - -
Lja1g5170 2257 ProSiteProfiles Biotinyl/lipoyl domain profile. 672 746 IPR000089 -
Lja1g5170 2257 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 400 - -
Lja1g5170 2257 SUPERFAMILY Single hybrid motif 678 748 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5170 Lja-Chr1 75892060 75907994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5170 5 2257 Acyl Lipid Metabolism Gene Families AT1G36160 80.655 0.0 3816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5170 K11262 - gmx:100778658 4130.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5170 1 75892060 75907994 Lja1g5170 1 75892060 75907994 ECH