LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5169	ATGGCTTCTCTGCGTGTTGTGTTTCGTCACATACACATAAACATGAACCACTGCTACTCCACTTCACCACGACCCATGGGTGGTTTACTCCTCCACCGTCGCGACACGTGGCGGCGGCGCTGCAACAGTGTTAAACCCCGTGCATGTTCAGACAATCATCACCGCAGTTACAGAGTAGTGCTGAACAAAGATGAACGGTTAGGAGAGCGTGTTGGTCACAACAACACTACCGAGCTCGGAAACTCGACGACGACCATTGCGGCCATCGTAACATCCTTGGGGGGCCCACCCGCCGCCGTCGGAATAGTTCGCCTCTCGGGTCCTCACGCGGTGTCCATAGCGGGTCGAGTGTTCAGACCCGGCCGGAGCACGTGGCGGCCCACCAGCCATGTGGTGGAGTACGGCGTGGTCTTCGACTCCGACGGGAACGTCATCGACGAGGTTTTGGCGGTGCCGATGCTAGCACCGAGGTCGTACACTCGGGAGGACGTGGTTGAGCTTCAATGTCACGGGAGTGAAGTGTGTCTCCGTCGCGTGCTCAGAACTTGTTTGGAAGCTGGAGCAACACTAGCTCAACCAGGTGAGTTTACTCTGCGTGCTTTTCTTAATGGGCGGTTGGATCTATCCCAAGCTGAAAATGTTGCGAAACTTATCGCAGCCAAATCCGTGGCTGCTGCAGATGCTGCGCTGGCGGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCGTTGAGAATTCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGACGATGAGATGCCGCCTCTAAATTTGAATCAGATTATGGAAAAAATACATAATATGTCCCGAGATGTTGAGAATGCATTGGAAACAGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTGGGCAAGTCAAGCCTTCTTAATGCTTGGAGCAAAAGTGAGAGGGCAATAGTCACCGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATTAGCGTTAATGGGATTCCTATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTTGAAAAGATTGGTGTAGAACGATCTGAAGCAGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACAGCTGAAGACACCAAACTTCTTGAAAGGATTCAGTCTACTAAGGAATCAACTGGATCTTCCACCCCCGCAATCCTTGTTGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGGTGTCATGGTCACAATTTTTTCAGTAAAAGTGTGTTTACATGTGCTGTAACTGGTCAAGGATTACAAGACTTAGAGAGCACAGTTTTAGAGATGGTGGGTCTGGATGTAGTTCCTGCTGGAGGTCGCCGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTTCAAGGTTACAATCATCAATAAGGGAGGAACTACCTCTGGATTTTTGGACAATTGATTTGAAGGATGCTGCAATGTCCCTTGGACAGATAAATGGAGAAGATATATCAGAAGAGGTGTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAA	1650	0.4794	MASLRVVFRHIHINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRVVLNKDERLGERVGHNNTTELGNSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVAKLIAAKSVAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPAILVVNKIDCKPCAETEWDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVLEMVGLDVVPAGGRRWTVNQRQCEQLVRTKEALSRLQSSIREELPLDFWTIDLKDAAMSLGQINGEDISEEVLSNIFGKFCIGK*	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5169	549	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	300	470	IPR031168	-
	Lja1g5169	549	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	83	549	-	-
	Lja1g5169	549	Coils	Coil	270	290	-	-
	Lja1g5169	549	Pfam	GTP-binding protein TrmE N-terminus	85	205	IPR018948	-
	Lja1g5169	549	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	465	IPR027417	-
	Lja1g5169	549	Pfam	MnmE helical domain	208	546	IPR025867	-
	Lja1g5169	549	Pfam	50S ribosome-binding GTPase	302	423	IPR006073	GO:0005525
	Lja1g5169	549	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	98	549	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Lja1g5169	549	CDD	trmE	298	470	IPR031168	-
	Lja1g5169	549	Gene3D	Probable tRNA modification gtpase trme; domain 1	72	205	IPR027266	GO:0005515
	Lja1g5169	549	Gene3D	tRNA modification GTPase MnmE domain 2	206	549	IPR027368	-
	Lja1g5169	549	Hamap	tRNA modification GTPase MnmE [mnmE].	84	549	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Lja1g5169	549	Gene3D	-	301	477	IPR027417	-
	Lja1g5169	549	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	83	549	-	-
	Lja1g5169	549	TIGRFAM	small_GTP: small GTP-binding protein domain	301	428	IPR005225	GO:0005525

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5169	Lja-Chr1	75799887	75804221	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5169	K03650		-	gmx:100779193	853.588

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5169	1	75799887	75804221	Lja1g5169	1	75799887	75804221	ECH