Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5166 ATGGGAGTGCAAGGGACTTTGGAATACTTGTCTGATTTACTCAAAAGCACCAAAAAGAAGAAAAAGAAGCAAACCCAAACAGTAGCTCTCAAAATCAGAATGGATTGTGAAGGCTGTGCACGCAAGGTTAAGCATGTCCTTTCCGGCGTTAAAGGAGCTAAATCTGTGGATGTGGACTTAAAGCAGCAGAAAGCAACCGTGACCGGATATGTTGAGCCAAAGAAAGTGCTGAAGGCTGCTCAGTCCACAAAGAAGAAGGTTGAGCTTTGGCCTTATGTTCCTTACACCATGGTTGCTCACCCATATGTTTCTCAGGCCTATGATAAGAAGGCACCTCCTAATATGGTTAGAAAGGTTGCTGACACTGGCAAAGTATCAGAGAGCATCGTGGACGATAGCTACACACAAATGTTCAGCGATGAGAACCCAAATGCCTGCTACATCATGTAA 450 0.4444 MGVQGTLEYLSDLLKSTKKKKKKQTQTVALKIRMDCEGCARKVKHVLSGVKGAKSVDVDLKQQKATVTGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYVSQAYDKKAPPNMVRKVADTGKVSESIVDDSYTQMFSDENPNACYIM* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5166 149 Gene3D - 12 91 - -
Lja1g5166 149 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 24 3 149 - -
Lja1g5166 149 Pfam Heavy-metal-associated domain 32 85 IPR006121 GO:0046872
Lja1g5166 149 SUPERFAMILY HMA, heavy metal-associated domain 25 91 IPR036163 GO:0046872
Lja1g5166 149 CDD HMA 34 88 IPR006121 GO:0046872
Lja1g5166 149 ProSiteProfiles Heavy-metal-associated domain profile. 34 89 IPR006121 GO:0046872
Lja1g5166 149 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 149 IPR045181 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5166 Lja-Chr1 75619462 75621281 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5166 - - gmx:100782955 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5166 1 75619462 75621281 Lja1g5166 1 75619462 75621281 ECH