Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5162 ATGGGTTCGTTTTTCAGTGTGCCAAATACCAAATCTGATACAGGTGACAGGGAAGGAGTCTCTCCAAATGAGGCATGTAAGAGGCAAAGAATGTCACCTACACTTTATGAAGAGAGTCCAAGACTAATTCCCAATCTCCCTGATGAGTTATCACTGCAAATTATTGCTAGACTTCCTAGGATTTGTTACTTGAATGTAAAACTGGTTTCAGATAAGTGGAAGTCAACTATCACGAGTTCGGAACTATATAAAGTAAGGAAAGAACTCGGGACAACCGAAGAGTGGCTATATCTGTTGGTTAAGGTTGGAGAAAACAAACTAATGTGGCATGGTTTAGATCCTCGTTCTCAGATATGGCAGAGACTGCCCAATATGCCGCATGTTGTTGACGAAGAAGAAACTAGAAAGGGTTCTTCTAGGCTCTGGATGTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAGGTTTTCTTGGACAGAAGGATGGATTTGATGAAATGCCCTTTTGTGGTTGTTCAATTGGAGCTGTAGGTGGATGTTTGTATGTTCTAGGTGGATTCTCTAAAGCTTCAACTATGAGATGTGTCTGGTGTTTTGATCCAATGCAAAATGCATGGAGAAAAGTGGCTTCTATGTCTACAGGGAGGGCATATTGTAAGACAGGGATCTTAAACAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCAGGACTAGTACCTCTTCAATCTGCTGAAGTTTATGATCCCTCTACAGATACATGGTCAGATGTGCCTAGTATGCCATTCTCAAGAGCTCAAGTCCTTCCCAGCGCATTCCTCGCTGACATGTTAAAGCCTATTGCTACCGGTTTGACCTCATATATGGGAAGGTTGTGTGTTCCACAGAGTTTGTATTCATGGCCCTTTTTTGTTGATGTTGGGGGTGAAATCTATGATCCTGAAACAAACTCATGGGTAGAAATGCCAAATGGAATGGGAGAGGGTTGGCCTGCAAGGCAAGCAGGTACAAAATTGAGTGTTGTGGTGGATGGTGAACTCTATGCTTTTGATCCTTCTAACTCAATGGATAGTGGAAAGATCAAGGTGTATGATCAAGGAGAAGATGCTTGGAAAGTAGTTATTGGGAAAGTTCCCATATATGATTCTGTTGACTCAGAGTCTCCCTATCTACTTGCTGGTTTCCATGGGAAGCTACATGTCATCACAAAAGATGCCAATCATTATATTACTGTTATGCAGGCTGATTTGGATTCTTCACCCTCAACTCTCTCAAAAAGTTCCACTGCTGAATCAGATGCAATTGTTTGGAAGATAGTTGCTACTAGGGGTTTGGGGGAAGCTGAACTAGTTAGTTGCCAAGTTGTTGATATCTAG 1389 0.419 MGSFFSVPNTKSDTGDREGVSPNEACKRQRMSPTLYEESPRLIPNLPDELSLQIIARLPRICYLNVKLVSDKWKSTITSSELYKVRKELGTTEEWLYLLVKVGENKLMWHGLDPRSQIWQRLPNMPHVVDEEETRKGSSRLWMWNMVEGIRIAEVIRGFLGQKDGFDEMPFCGCSIGAVGGCLYVLGGFSKASTMRCVWCFDPMQNAWRKVASMSTGRAYCKTGILNNKLYVVGGVSQGQAGLVPLQSAEVYDPSTDTWSDVPSMPFSRAQVLPSAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWVEMPNGMGEGWPARQAGTKLSVVVDGELYAFDPSNSMDSGKIKVYDQGEDAWKVVIGKVPIYDSVDSESPYLLAGFHGKLHVITKDANHYITVMQADLDSSPSTLSKSSTAESDAIVWKIVATRGLGEAELVSCQVVDI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5162 462 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 462 - -
Lja1g5162 462 SUPERFAMILY F-box domain 41 85 IPR036047 GO:0005515
Lja1g5162 462 SMART fbox_2 46 86 IPR001810 GO:0005515
Lja1g5162 462 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Lja1g5162 462 SUPERFAMILY Kelch motif 103 406 IPR015915 GO:0005515
Lja1g5162 462 Gene3D - 103 384 IPR015915 GO:0005515
Lja1g5162 462 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 462 - -
Lja1g5162 462 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g5162 462 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g5162 462 Pfam F-box-like 43 84 IPR001810 GO:0005515
Lja1g5162 462 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Lja1g5162 462 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Lja1g5162 462 SMART kelc_smart 229 279 IPR006652 GO:0005515
Lja1g5162 462 SMART kelc_smart 182 228 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5162 Lja-Chr1 75501077 75503917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5162 31 262 EF-hand Containing Proteins AT4G39560 27.155 7.06e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5162 - - gmx:100806691 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5162 1 75501077 75503917 Lja1g5162 1 75501077 75503917 ECH