Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5103 ATGGATTTGAATCATATCCAGTTTGCTTTACGCTATTGCAGACGCTTTAGAGCTATCAAACATGCCAAATCACTCCATTCGTATATGATAAAATCTGGACTTTTCAACCATGTTTTTCTCCTAAACAACATGATCTCTGTCTATGCAAAGTGTTCAAGTTTCCATGATGCACGAGCCCTGTTCGACGAAATGCCTCACAGGAACATTGTTTCTTGGACAACAATGGTCTCTACACTCACCAATTCTGGGAAGCCCCATGAGGCTCTTACACTCTACAACGAGATGCTGGAATCCAGAACTGAGCATCCCAATCAATTCTTGTACTCTGCGGTTCTCAAGGCGTGTGGTATCGTGGGAGATGTTGAATTGGGCAAGTTGGTTCACCTCCATATATCTGAAGATAAGCTAGAGTTTGACACTGTTTTGATGAATGCCCTGTTGGACATGTACATCAAATGTGGGAGCTTGAGTGATGCCGAACGAGTTTTCTATGAAATCCCGCGTAAAAATTCCACCTCATGGAACACCCTCATTCTGGGGCATGCCAAACAAGGGTTGATGGGTGATGCGCTGAAACTGTTTGATCAAATGCTGGAACCAGATCTTGTATCTTGGAATAGCATGATTGCTGGTCTGGCAGATAATGCTAGTCACCATGCATTGCAGTTTGTTTCTATGATGCACCTGAAGGGCCTTAAACTAGATGAGTTCACATTCCCCTGTGCCCTTAAAGCCTGTGGTCTTTGTGGTGAGTCAACCTTAGGGAGACAGATTCATTGTTATATTATCAAGTCGGGGTTTGAGTCTTGCTGTTACTGTATATCGGCGTTAATTAATATGTATTCGAATTGCAAGCTATTGGATGAAGCAAGGAAGATATTTGATCAATTCTTTAGGAACTCTCGTGTTTCTGAAAGCTTGGCACTGTGGAATTCTATGATCACTGGGTATGTTGCCAATGAGGATTATGCAAATGCTCTCAGTCTGATTGCTCGTATGCATTATTCTGGTGTACAATTTGATTTTCATACCTTCAGTGTTGCTTTAAAGGTCTGCATCTACTTCCATTACTTGAAATTGGCATCTCAAGTGCATGGATTGGTCATCACCAGTGGTCATGAGTTAGATTGTGTTGTTGGAAGCATTCTTATTGATCTATATGCGATACAGGGTAATATTAACAATGCATTAAGATTGTTTGAAAGGCTTCCGGATAAAGATGTTGTGGCCTGGTCCAGTTTGATTGCTGGTTGTGCTAGATTTGGGTCAGAAACATTAGCTTTTTCCCTCTTTATGGATATGGTTCATTTGGGTCTTGAGATAGACCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGATTGGCATCACATCAAAGTGGCAAGCAAATTCATGCTTTATGTCTTAAGAAAGGGTATGAATCTGAGACAGTTATTACAACTGCTCTTATTGATATGTATGCAAAATGTGGTCAAATTGAGGACGCCTTGGCTTTGGTTCATTGTCTTTCGGAAATAGATACCATGTGTTGGACAGGAATTATTGTGGGATGTGCACAAAATGGAAGAGCAGTTGAGGCAGTTAGTCTTCTGCATAAGATGGTAGAATCTGGTACGCAGCCAAACGAAGTCACCATTCTAGGTGTCCTTACTGCATGTAGACATGCTGGTCTAGTTGAAGAGGCATGTGCTATATTTAGTTCTATTGAAACAGAGTATGGATTGACACCAGGCCCAGAACATTACAATTGTATGGTTGATTTACTTGGTCAAGCAGGACATCTGAAAGAAGCACAAAAACTGATCACTGACATGCCATTTAAGCCTGACAAAACTATATGGTGCTCCTTGCTTGGTGCCTGTGAAATTCACAAGAACCGATATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGTTTCTGTACATATAATGCTGTCAAATGTTTATGCAGCCCTTGGAATGTGGGATAGTTTGAGTAAGGTAAGAGAAGCTGTCAAAAGAGTAGGCATAAAACGAGCTGGAAAAAGCTGGATTGAGATCTCTAGTTGA 2070 0.4097 MDLNHIQFALRYCRRFRAIKHAKSLHSYMIKSGLFNHVFLLNNMISVYAKCSSFHDARALFDEMPHRNIVSWTTMVSTLTNSGKPHEALTLYNEMLESRTEHPNQFLYSAVLKACGIVGDVELGKLVHLHISEDKLEFDTVLMNALLDMYIKCGSLSDAERVFYEIPRKNSTSWNTLILGHAKQGLMGDALKLFDQMLEPDLVSWNSMIAGLADNASHHALQFVSMMHLKGLKLDEFTFPCALKACGLCGESTLGRQIHCYIIKSGFESCCYCISALINMYSNCKLLDEARKIFDQFFRNSRVSESLALWNSMITGYVANEDYANALSLIARMHYSGVQFDFHTFSVALKVCIYFHYLKLASQVHGLVITSGHELDCVVGSILIDLYAIQGNINNALRLFERLPDKDVVAWSSLIAGCARFGSETLAFSLFMDMVHLGLEIDHFVLSIVLKVSSRLASHQSGKQIHALCLKKGYESETVITTALIDMYAKCGQIEDALALVHCLSEIDTMCWTGIIVGCAQNGRAVEAVSLLHKMVESGTQPNEVTILGVLTACRHAGLVEEACAIFSSIETEYGLTPGPEHYNCMVDLLGQAGHLKEAQKLITDMPFKPDKTIWCSLLGACEIHKNRYLANIVAEHLLATSPEDVSVHIMLSNVYAALGMWDSLSKVREAVKRVGIKRAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5103 689 Pfam E motif 625 686 IPR046848 -
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 409 438 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 511 539 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 142 170 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 381 407 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 173 199 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 275 296 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 582 606 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 482 502 IPR002885 -
Lja1g5103 689 Pfam PPR repeat 310 338 IPR002885 -
Lja1g5103 689 Pfam PPR repeat family 67 115 IPR002885 -
Lja1g5103 689 PANTHER BNAC03G28070D PROTEIN 9 121 - -
Lja1g5103 689 PANTHER BNAC03G28070D PROTEIN 83 684 - -
Lja1g5103 689 Gene3D Tetratricopeptide repeat domain 2 120 IPR011990 GO:0005515
Lja1g5103 689 Gene3D Tetratricopeptide repeat domain 360 464 IPR011990 GO:0005515
Lja1g5103 689 SUPERFAMILY TPR-like 39 664 IPR011990 GO:0005515
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Lja1g5103 689 Gene3D Tetratricopeptide repeat domain 121 199 IPR011990 GO:0005515
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Lja1g5103 689 Gene3D Tetratricopeptide repeat domain 214 359 IPR011990 GO:0005515
Lja1g5103 689 Gene3D Tetratricopeptide repeat domain 480 689 IPR011990 GO:0005515
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Lja1g5103 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 121 - -
Lja1g5103 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 83 684 - -
Lja1g5103 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Lja1g5103 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Lja1g5103 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 100 IPR002885 -
Lja1g5103 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Lja1g5103 689 TIGRFAM PPR: pentatricopeptide repeat domain 42 70 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5103 Lja-Chr1 73581191 73583260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5103 10 687 Glycoside Hydrolase AT3G49170 30.447 1.10e-105 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5103 - - gmx:100780678 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5103 1 73581191 73583260 Lja1g5103 1 73581191 73583260 ECH