Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5085 ATGATAATTTTTGTATTTTATCCATACCTCTCAGTCTCTCACTCAGCGTCTCAAACTCAGAAGGTCAAAGTTTCAGTTGCCGCCACCGCCATGTCTACTGTTCGCACTGGGAATGAGACCCTCGCCCACCATCCTTTGCAGATTGCCAAGCGCTTAGAGAAGTTCAAACCAACAATCTTCACCCAAATGAGCATGCTTGCCATCAAACATGGAGCTGTAAACCTTGGTCAGGGATTTCCCAACTTTGATGGTCCAGAATTTGTAAAGGAAGCAGCGATTCAGGCTATCAGGGATGGGAAAAATCAGTATGCGAGGGGTTATGGAGTTCCTGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGATACTGGACTAGTGGTAGACCCTGAAAAGGAAGTTACTGTTACATCTGGATGCACAGAAGCAATACTTGCAACTATGTTAGGATTAATAAATCCTGGTGATGAGGTTATCCTTTTTGCTCCTTTTTATGATTCTTATAATGCCACTTTATCCATGGCTGGTGCAGAAATTAAAAGCATCACTCTGCAACCTCCGGATTTTGCGGTCCCGATTGAAGAGTTGAAGTCCACCATCTCTAAGAATACCCGTGCTGTTTTTATAAATACCCCTCACAACCCTACTGGAAAGATTTTTACTCTGGAGGAACTCAATTCCATTGCATCTCTCTGCATTGAGAATGATGCTCTGGTTTTCACAGATGAAGTTTATCATAAGTTGGCATTTGATATGGAGCACATTTCGATCGCTTCTTTGCCTGGAATGTTTGAGAGAACAGTGACAATGAACTCTTTGGGGAAGACATTCTCCTTAACAGGATGGAAGGTAGGATGGGCCATAGCACCACCACATTTAACATGGGGACTGCGACAGGCACACTCTTTTACCACTTTCTCAACCCCCAATCCTTTGCAATGGGGTGCTGCAGCAGCTCTCAGAGCACCGGATTCTTACTTTGCGGAGCTAAAGAAGGATTATATGGCAAAGAGAGCAATTTTGGTGGAAGGATTGGTAGCGGTTGGCTTCAAGGTGTTCCCATCAAGTGGAACTTTCTTTGTGTTAGTAGATCACACCCCTTTTGGACATGAAAATGATGTTGCATTCTGTGAATATCTAATTAAGGAGGTGGGAGTGGCGGCAATACCTTCCAGTGTATTTTACTTGAATCCAGAAGAGGGAAAGAATCTAGTCAGGTTTACTTTCTGCAAGGATGAGGAAACTCTGAAGGCTGCAGTTCAGAGGATGAAGGAGAAGCTTAGAAAATAA 1290 0.4341 MIIFVFYPYLSVSHSASQTQKVKVSVAATAMSTVRTGNETLAHHPLQIAKRLEKFKPTIFTQMSMLAIKHGAVNLGQGFPNFDGPEFVKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKDTGLVVDPEKEVTVTSGCTEAILATMLGLINPGDEVILFAPFYDSYNATLSMAGAEIKSITLQPPDFAVPIEELKSTISKNTRAVFINTPHNPTGKIFTLEELNSIASLCIENDALVFTDEVYHKLAFDMEHISIASLPGMFERTVTMNSLGKTFSLTGWKVGWAIAPPHLTWGLRQAHSFTTFSTPNPLQWGAAAALRAPDSYFAELKKDYMAKRAILVEGLVAVGFKVFPSSGTFFVLVDHTPFGHENDVAFCEYLIKEVGVAAIPSSVFYLNPEEGKNLVRFTFCKDEETLKAAVQRMKEKLRK* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5085 429 SUPERFAMILY PLP-dependent transferases 48 428 IPR015424 -
Lja1g5085 429 Gene3D - 85 323 IPR015421 GO:0003824
Lja1g5085 429 PANTHER FI04487P 49 429 - -
Lja1g5085 429 Pfam Aminotransferase class I and II 73 422 IPR004839 GO:0009058|GO:0030170
Lja1g5085 429 Gene3D Aspartate Aminotransferase, domain 1 62 423 IPR015422 GO:0003824
Lja1g5085 429 PANTHER FI04487P 49 429 - -
Lja1g5085 429 CDD AAT_like 73 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5085 Lja-Chr1 72983892 72986468 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5085 K23977 - gmx:100818968 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5085 1 72983892 72986468 Lja1g5085 1 72983892 72986468 ECH