Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5078 ATGGCGAAGGACTTGAGAACCCGAATCACTCTTCTCTTGTTCTTCTGCTACACCACTTTTGTGCTCCATTCAACTGAGGCAGTTTGGTTAACCCTTCCCAGTTCAGGAACTAAGTGCGTGTCGGAGGAAATCCAGACACACATCGTCGTTTTAGCCGATTACTATGTTGTAGCCGATGATGAAATTAAGGGTCACCAGCTTCCCACTGTTTCTGCCAAGGTGACATCTCCTTATGGAAATAATCTTCACCACAATGAAAATGTTACCCAAGGTCAGTTTGCATTCACAGCAACTGAGAGTGGGAACTACATGGCGTGCTTTTGGATTGATGGCAAACATCAAGAAGCTGCAGGAGGTACCATACTCAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGGGACTCTGTTGCAAAAAAGGAAAAGCTAGAGGGTGTTGAACTTGAGCTCAGGAAACTTGAAGGAGCTGTGGAAGCCATCCGTGATAATCTAATATACTTGAAGACTAGGGAAGAGGAGATGAGGGAAGTTAGTGAAACAACAAATGCTAGAGTTGCTTGGTTCAGTATAATGTCTCTTGGCCTCTGCATTTCGGTTTCAGGGTTGCAGCTATGGTATCTGAAGCGATACTTTCAGAAGAAGAAGCTCATATAG 657 0.4414 MAKDLRTRITLLLFFCYTTFVLHSTEAVWLTLPSSGTKCVSEEIQTHIVVLADYYVVADDEIKGHQLPTVSAKVTSPYGNNLHHNENVTQGQFAFTATESGNYMACFWIDGKHQEAAGGTILSLEWKTGISAKDWDSVAKKEKLEGVELELRKLEGAVEAIRDNLIYLKTREEEMREVSETTNARVAWFSIMSLGLCISVSGLQLWYLKRYFQKKKLI* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5078 218 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 9 218 - -
Lja1g5078 218 Pfam emp24/gp25L/p24 family/GOLD 29 213 IPR009038 -
Lja1g5078 218 ProSiteProfiles GOLD domain profile. 37 153 IPR009038 -
Lja1g5078 218 Coils Coil 144 164 - -
Lja1g5078 218 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 9 218 IPR015720 -
Lja1g5078 218 SMART EMP24_GP25L_2 27 213 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5078 Lja-Chr1 72661889 72664545 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5078 K20352 - gmx:100500676 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5078 1 72661889 72664545 Lja1g5078 1 72661889 72664545 ECH