Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5053 ATGGCTCAAACCATGTTGCTCATGTCCAGTGTCTCAAGTAGCTATTCTGTGGATTTGAAGAAAGATCCTTTGCTCCATTTGCAGAGTCAGAGATTAAGGCCTAAATTCTCTCAGCTCTCATTCAACCCACTTCCTTCAAACTCTTCCTTGTTTTCATCTCGCACATTCACTACTCTGGCTCTCTTCAAATCAAAGGCCAAAGCCCCTCCTCCCAAGGTTGTGAAGCAAAAGCCAAAAGTTGAAGATGGTGTGTTTGGCACTTCTGGAGGGATTGGTTTTACTAAGCAGAATGAGCTATTTGTGGGTCGTGTTGCCATGATTGGTTTTGCGGCATCATTGTTGGGTGAAGCACTTACTGGCAAAGGAATTCTAGCACAACTGAATTTGGAAACTGGAATTCCCATTTATGAAGCAGAGCCTCTTCTCCTGTTTTTCATCCTCTTCACTCTGCTTGGAGCCATTGGAGCTCTTGGTGACCGTGGTAAGTTTGTTGATGATGAATCTCCTACTGGACTTGACAAGGCTGTTATTCCTCCAGGGAAAGGCTTGAGAGGAGCTCTTGGTCTCAGTGAAGGAGGTCCTCTATTTGGTTTCACCAAATCAAACGAGCTTTTTGTTGGAAGATTGGCTCAATTGGGTTTTGCTTTCTCTTTGATTGGAGAAATTATTACTGGGAAGGGAGCTCTAGCACAACTCAACATTGAGACCGGGATACCAATTAATGAAATAGAACCCCTAGTGTTGTTCAACGTTGCTTTCTTCTTCATTGCTGCTTTGAATCCGGGAACTGGTAAATTTGTTTCAGATGACGGGGAAGATTAG 822 0.4367 MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTTLALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5053 273 Gene3D Chlorophyll a/b binding protein domain 43 244 - -
Lja1g5053 273 SUPERFAMILY Chlorophyll a-b binding protein 57 252 - -
Lja1g5053 273 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 193 259 - -
Lja1g5053 273 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 1 185 - -
Lja1g5053 273 Pfam Chlorophyll A-B binding protein 89 218 IPR022796 -
Lja1g5053 273 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 193 259 - -
Lja1g5053 273 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 185 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5053 K03542 - gmx:100807355 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5053 1 71269370 71271910 Lja1g5053 1 71269370 71271910 ECH