Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5038 ATGGCGAGGGTTTCGATTTGCTTCCTCTTCGCGTTCGCTCTCTCTGTCCTCCTCGCTTCTTCGCAGATCCATGCGATTGAATCGGAGGCTAAGGAGTTCGTGCTCACATTGGATAACTCCAATTTTTCTGAAATTGTCAGCAAGCACGATTTCATCGTTGTTGAATTCTACGCACCGTGGTGTGGACACTGCAAGAATCTTGCTCCTGAGTATGAGAAGGCTGCTGCGGTCTTGAGTAGCCATGATCCTCCGATTGTTTTGGCTAAAGTTGATGCCAATGAGGAGAACAACAAGGACCTTGCATCTCAGTATGAGGTTCGGGGATTCCCAACGATTAAGATTCTGAGAAACGGTGGAAAGGACAGTCAAGAATACAAAGGACCCCGTGAAGCCGATGGTATTGTTGACTATTTGAAAAAGCAGACTGGTCCTGCATCCACTGAAATTAAATCTGCTGATGATGCCACTGCTTTCATTGGTACAAAGAAAATTGTTATTGTTGGAGTTTTCCCCAAATTTTCCGGGGAGGAGTTCGATAACTTCTTTGCATTGGCAGAGAAACTGCGATCTGATTATGACTTTGGTCACACTTTGGATGCCAAAAACCTTCCACGGGGTGAATCTTCCGTGAGTGGGCCTGTTGTTAGGTTGTTCAAGCCATTTGACGAGCTTTTTGTTGACTCCAAGGAATTCAATGTCGAAGCTCTGGAGAAATTTATTGAAGAATCTAGTATCCCTGTTGTGACTGTCTTTAACAATGACCCAAGCAACCACCCTTTTGTTTCCAAATTCTTTAACAGCCAAAACCCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAGGTGCTGAATCTATCCAAGCAAAATACCGTGAAGCCGCTGAGGAATATAGAAAGCAGGACGTAAGCTTTCTGGTGGGAGATGTTGAGGCCAGTCAAGGTGCCTTCCAGTATTTCGGGCTAAAGGAAGAAGATGTTCCTCTAATCATCATTCAACAAACTGATGGCAAGAAATTTTTCAAGCCTCAGCTGGAAGCTGATCAGATTTCATCTTGGTTGAAGGCATACAAGGATGGAAATGTTGCACCATATGTCAAGTCTGAGCCTATTCCTGAAACAAACAATGAACCTGTTAAAGTGGTAGTTGGGGACAGTCTTCAAGATGTAGTTTTCAAGTCTGGAAAGAATGTTCTGCTCGAGTTTTATGCTCCTTGGTGTGGTCACTGCAAGAGTCTGGCTCCAATACTGGATGAAGTTGCTGTCTCATATCAAAATGATGCTGATATTGTTATTGCAAAATTTGACGCAACTGCCAATGATGTCCCAACTGAAAGCTTTGAAGTCCAAGGTTATCCAACTCTGTACTTCATTTCATCAAGTGGAAAAATTTCACCTTATGATGGCGGCAGGACCAAGGAAGACATCATACAATTCATTGAAAACAGCCGGGATAAGAAATCTACTCAGATAGAAGAAGAGCAAGGAAAAGATGAGATTCAGCAAGAAAAACCAAAGGACGAGCTTTGA 1527 0.4316 MARVSICFLFAFALSVLLASSQIHAIESEAKEFVLTLDNSNFSEIVSKHDFIVVEFYAPWCGHCKNLAPEYEKAAAVLSSHDPPIVLAKVDANEENNKDLASQYEVRGFPTIKILRNGGKDSQEYKGPREADGIVDYLKKQTGPASTEIKSADDATAFIGTKKIVIVGVFPKFSGEEFDNFFALAEKLRSDYDFGHTLDAKNLPRGESSVSGPVVRLFKPFDELFVDSKEFNVEALEKFIEESSIPVVTVFNNDPSNHPFVSKFFNSQNPKAMLFINFTAEGAESIQAKYREAAEEYRKQDVSFLVGDVEASQGAFQYFGLKEEDVPLIIIQQTDGKKFFKPQLEADQISSWLKAYKDGNVAPYVKSEPIPETNNEPVKVVVGDSLQDVVFKSGKNVLLEFYAPWCGHCKSLAPILDEVAVSYQNDADIVIAKFDATANDVPTESFEVQGYPTLYFISSSGKISPYDGGRTKEDIIQFIENSRDKKSTQIEEEQGKDEIQQEKPKDEL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5038 508 TIGRFAM pdi_dom: protein disulfide-isomerase domain 38 141 IPR005788 GO:0003756
Lja1g5038 508 TIGRFAM pdi_dom: protein disulfide-isomerase domain 383 481 IPR005788 GO:0003756
Lja1g5038 508 CDD PDI_a_PDI_a'_C 377 479 - -
Lja1g5038 508 SUPERFAMILY Thioredoxin-like 147 246 IPR036249 -
Lja1g5038 508 SUPERFAMILY Thioredoxin-like 345 482 IPR036249 -
Lja1g5038 508 Gene3D Glutaredoxin 142 246 - -
Lja1g5038 508 PANTHER PROTEIN DISULFIDE-ISOMERASE 12 494 - -
Lja1g5038 508 CDD PDI_b_family 146 242 - -
Lja1g5038 508 Gene3D Glutaredoxin 372 487 - -
Lja1g5038 508 PANTHER PROTEIN DISULFIDE ISOMERASE 12 494 - -
Lja1g5038 508 Gene3D Glutaredoxin 247 371 - -
Lja1g5038 508 TIGRFAM ER_PDI_fam: protein disulfide isomerase 34 508 IPR005792 GO:0003756
Lja1g5038 508 Pfam Thioredoxin 379 480 IPR013766 -
Lja1g5038 508 Pfam Thioredoxin 34 140 IPR013766 -
Lja1g5038 508 ProSitePatterns Thioredoxin family active site. 398 416 IPR017937 -
Lja1g5038 508 ProSiteProfiles Thioredoxin domain profile. 356 484 IPR013766 -
Lja1g5038 508 SUPERFAMILY Thioredoxin-like 243 375 IPR036249 -
Lja1g5038 508 Gene3D Glutaredoxin 22 141 - -
Lja1g5038 508 CDD PDI_a_family 35 138 - -
Lja1g5038 508 SUPERFAMILY Thioredoxin-like 34 144 IPR036249 -
Lja1g5038 508 CDD PDI_b'_family 261 357 - -
Lja1g5038 508 Coils Coil 280 300 - -
Lja1g5038 508 MobiDBLite consensus disorder prediction 483 508 - -
Lja1g5038 508 Pfam Thioredoxin-like domain 170 354 - -
Lja1g5038 508 ProSiteProfiles Thioredoxin domain profile. 24 143 IPR013766 -
Lja1g5038 508 ProSitePatterns Thioredoxin family active site. 53 71 IPR017937 -
Lja1g5038 508 PRINTS Thioredoxin family signature 52 60 - -
Lja1g5038 508 PRINTS Thioredoxin family signature 60 69 - -
Lja1g5038 508 PRINTS Thioredoxin family signature 105 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5038 Lja-Chr1 70951393 70954949 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5038 K09580 - gmx:100170705 835.099